NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1262433 Query DataSets for GSM1262433
Status Public on Apr 07, 2014
Title ACC76
Sample type genomic
 
Source name ACC76
Organism Homo sapiens
Characteristics Sex: F
age: 45
cell type: Adrenocortical carcinoma
Extracted molecule genomic DNA
Extraction protocol Tumor samples were powdered under liquid nitrogen. DNA was extracted and purified by cesium chloride gradient ultracentrifugation or by proteinase K digestion and ethanol extraction, followed by a clean-up step on columns (QIAGEN, Courtaboeuf, France).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Adrenocortical carcinoma
Data processing standard Illumina protocol
 
Submission date Nov 12, 2013
Last update date Apr 07, 2014
Contact name Nabila Elarouci
E-mail(s) Nabila.Elarouci@ligue-cancer.net
Organization name Ligue Nationale contre le Cancer
Department Recherche
Lab Carte d'identité des tumeurs
Street address 14 rue Corvisart
City Paris
ZIP/Postal code 75 013
Country France
 
Platform ID GPL17913
Series (2)
GSE49280 Integrated genomic analyses of adrenocortical tumors (SNP array, DNA methylation, mRNA and miRNA expression).
GSE52296 SNP data from 76 adrenocortical carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
1KG_1_100177980 0.0426 0 18195 732 1.307 0.055 1.362 0.027
1KG_1_108681808 -0.2581 0 17520 542 1.258 0.034 1.292 0.017
1KG_1_109440678 -0.262 1 517 9759 0.01 1.093 1.103 0.994
1KG_1_109479801 -0.1839 0.0202 19016 1438 1.365 0.134 1.499 0.062
1KG_1_110655430 -0.6746 0.9967 388 4768 0.008 0.53 0.538 0.991
1KG_1_11193226 0.0096 0.03 19283 1966 1.384 0.193 1.577 0.088
1KG_1_113933669 -0.0607 0.9837 712 6732 0.029 0.751 0.78 0.976
1KG_1_115258741 -0.0542 0.0415 21265 2506 1.527 0.252 1.779 0.104
1KG_1_115527488 0.1691 0.009 2783 277 0.188 0.02 0.209 0.069
1KG_1_1158675 0.0283 0.9901 1377 13212 0.068 1.482 1.549 0.971
1KG_1_117644041 -0.7389 0.0108 9402 379 0.669 0.025 0.693 0.024
1KG_1_118486040 -0.3399 0.005 19988 1272 1.436 0.114 1.55 0.05
1KG_1_11893660 0.0432 0 21578 882 1.552 0.068 1.62 0.028
1KG_1_12066749 -0.0082 0 14327 862 1.026 0.074 1.099 0.046
1KG_1_12343587 -0.0055 1 831 11002 0.031 1.233 1.264 0.984
1KG_1_12632789 0.0593 1 3818 10598 0.249 1.184 1.433 0.868
1KG_1_12711251 -0.0911 1 823 13466 0.027 1.511 1.538 0.989
1KG_1_1323216 0.0199 0.9882 827 5659 0.038 0.63 0.668 0.961
1KG_1_14106394 -0.0474 0.9852 1397 11400 0.072 1.277 1.349 0.964
1KG_1_145562155 0.0703 0.0052 20096 715 1.445 0.051 1.496 0.022

Total number of rows: 298930

Table truncated, full table size 16503 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap