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Sample GSM1262471 Query DataSets for GSM1262471
Status Public on Apr 07, 2014
Title ACC71
Sample type genomic
 
Source name ACC71
Organism Homo sapiens
Characteristics Sex: F
age: 66
cell type: Adrenocortical carcinoma
Extracted molecule genomic DNA
Extraction protocol Tumor samples were powdered under liquid nitrogen. DNA was extracted and purified by cesium chloride gradient ultracentrifugation or by proteinase K digestion and ethanol extraction, followed by a clean-up step on columns (QIAGEN, Courtaboeuf, France).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Adrenocortical carcinoma
Data processing standard Illumina protocol
 
Submission date Nov 12, 2013
Last update date Apr 07, 2014
Contact name Nabila Elarouci
E-mail(s) Nabila.Elarouci@ligue-cancer.net
Organization name Ligue Nationale contre le Cancer
Department Recherche
Lab Carte d'identité des tumeurs
Street address 14 rue Corvisart
City Paris
ZIP/Postal code 75 013
Country France
 
Platform ID GPL17913
Series (2)
GSE49280 Integrated genomic analyses of adrenocortical tumors (SNP array, DNA methylation, mRNA and miRNA expression).
GSE52296 SNP data from 76 adrenocortical carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
1KG_1_100177980 -0.5831 0.0041 13462 690 0.841 0.044 0.886 0.033
1KG_1_108681808 -0.2208 0 20643 563 1.296 0.027 1.323 0.013
1KG_1_109440678 -0.3435 0.9972 614 11959 0.014 1.03 1.045 0.991
1KG_1_109479801 -0.2502 0.0292 20633 1918 1.294 0.144 1.438 0.071
1KG_1_110655430 -0.6461 0.9978 396 6301 0.007 0.541 0.548 0.992
1KG_1_11193226 -0.4167 0.0263 16508 1811 1.033 0.138 1.171 0.085
1KG_1_113933669 -0.4814 0.9976 441 6631 0.01 0.57 0.579 0.989
1KG_1_115258741 -0.3905 0.0346 19406 2417 1.216 0.188 1.404 0.098
1KG_1_115527488 -0.827 0.0202 1644 192 0.093 0.012 0.105 0.079
1KG_1_1158675 -0.1843 0.9957 1194 14900 0.048 1.284 1.332 0.976
1KG_1_117644041 -0.4822 0.0025 12891 401 0.805 0.02 0.825 0.016
1KG_1_118486040 -0.3836 0.0152 22009 1772 1.381 0.13 1.512 0.06
1KG_1_11893660 -0.2342 0 20373 932 1.279 0.059 1.338 0.029
1KG_1_12066749 -0.761 0.0249 9548 928 0.593 0.068 0.661 0.073
1KG_1_12343587 -0.2689 1 743 11947 0.023 1.029 1.052 0.986
1KG_1_12632789 -0.2278 1 3446 11336 0.194 0.974 1.168 0.875
1KG_1_12711251 -0.2334 0.9993 889 15865 0.027 1.368 1.395 0.987
1KG_1_1323216 -0.4768 0.9791 783 5161 0.033 0.442 0.475 0.953
1KG_1_14106394 -0.5436 0.3098 7389 4637 0.452 0.391 0.843 0.454
1KG_1_145562155 -0.264 0.0105 18181 798 1.14 0.049 1.189 0.028

Total number of rows: 298930

Table truncated, full table size 16563 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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