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Sample GSM1262496 Query DataSets for GSM1262496
Status Public on Apr 07, 2014
Title ACC67
Sample type genomic
 
Source name ACC67
Organism Homo sapiens
Characteristics Sex: M
age: 42
cell type: Adrenocortical carcinoma
Extracted molecule genomic DNA
Extraction protocol Tumor samples were powdered under liquid nitrogen. DNA was extracted and purified by cesium chloride gradient ultracentrifugation or by proteinase K digestion and ethanol extraction, followed by a clean-up step on columns (QIAGEN, Courtaboeuf, France).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Adrenocortical carcinoma
Data processing standard Illumina protocol
 
Submission date Nov 12, 2013
Last update date Apr 07, 2014
Contact name Nabila Elarouci
E-mail(s) Nabila.Elarouci@ligue-cancer.net
Organization name Ligue Nationale contre le Cancer
Department Recherche
Lab Carte d'identité des tumeurs
Street address 14 rue Corvisart
City Paris
ZIP/Postal code 75 013
Country France
 
Platform ID GPL17913
Series (2)
GSE49280 Integrated genomic analyses of adrenocortical tumors (SNP array, DNA methylation, mRNA and miRNA expression).
GSE52296 SNP data from 76 adrenocortical carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
1KG_1_100177980 -0.0825 0 16378 537 1.198 0.051 1.249 0.027
1KG_1_108681808 0.0393 0 21205 380 1.554 0.029 1.584 0.012
1KG_1_109440678 -0.0776 1 404 10674 0.004 1.246 1.25 0.998
1KG_1_109479801 0.0699 0.0531 21644 2121 1.584 0.233 1.817 0.093
1KG_1_110655430 -0.3464 0.9909 460 5672 0.016 0.661 0.677 0.985
1KG_1_11193226 -0.0704 0.031 17897 1688 1.308 0.184 1.493 0.089
1KG_1_113933669 -0.3533 0.9994 361 5351 0.009 0.624 0.632 0.991
1KG_1_115258741 -0.1496 0.0193 19870 1770 1.454 0.193 1.646 0.084
1KG_1_115527488 -0.3345 0 1960 128 0.135 0.012 0.146 0.055
1KG_1_1158675 0.0344 1 996 12845 0.044 1.5 1.544 0.981
1KG_1_117644041 -0.0997 0.0024 14370 312 1.05 0.026 1.076 0.015
1KG_1_118486040 -0.058 0.012 23686 1472 1.736 0.155 1.891 0.057
1KG_1_11893660 0.0348 0 21111 656 1.547 0.062 1.609 0.025
1KG_1_12066749 -0.6098 0 9322 462 0.678 0.046 0.724 0.043
1KG_1_12343587 -0.0462 1 764 10264 0.031 1.198 1.229 0.984
1KG_1_12632789 -0.0634 1 2730 9490 0.177 1.106 1.284 0.899
1KG_1_12711251 -0.1045 1 578 12874 0.013 1.504 1.517 0.994
1KG_1_1323216 -0.341 0.9879 626 4213 0.03 0.49 0.52 0.961
1KG_1_14106394 -0.5986 0 7803 507 0.565 0.052 0.618 0.059
1KG_1_145562155 -0.4018 0.0063 14239 422 1.04 0.038 1.079 0.024

Total number of rows: 298930

Table truncated, full table size 16383 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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