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Sample GSM1262499 Query DataSets for GSM1262499
Status Public on Apr 07, 2014
Title ACC114
Sample type genomic
 
Source name ACC114
Organism Homo sapiens
Characteristics Sex: F
age: 37
cell type: Adrenocortical carcinoma
Extracted molecule genomic DNA
Extraction protocol Tumor samples were powdered under liquid nitrogen. DNA was extracted and purified by cesium chloride gradient ultracentrifugation or by proteinase K digestion and ethanol extraction, followed by a clean-up step on columns (QIAGEN, Courtaboeuf, France).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Adrenocortical carcinoma
Data processing standard Illumina protocol
 
Submission date Nov 12, 2013
Last update date Apr 07, 2014
Contact name Nabila Elarouci
E-mail(s) Nabila.Elarouci@ligue-cancer.net
Organization name Ligue Nationale contre le Cancer
Department Recherche
Lab Carte d'identité des tumeurs
Street address 14 rue Corvisart
City Paris
ZIP/Postal code 75 013
Country France
 
Platform ID GPL17913
Series (2)
GSE49280 Integrated genomic analyses of adrenocortical tumors (SNP array, DNA methylation, mRNA and miRNA expression).
GSE52296 SNP data from 76 adrenocortical carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
1KG_1_100177980 -0.2811 2e-04 16305 668 1.041 0.049 1.09 0.03
1KG_1_108681808 0.0206 0 23899 562 1.53 0.035 1.565 0.014
1KG_1_109440678 -0.0812 1 525 13606 0.01 1.24 1.249 0.995
1KG_1_109479801 -0.0198 0.033 23661 2116 1.513 0.177 1.69 0.074
1KG_1_110655430 -0.3848 0.9903 509 7079 0.016 0.643 0.659 0.984
1KG_1_11193226 -0.1933 0.0217 18956 1837 1.21 0.154 1.365 0.081
1KG_1_113933669 -0.2063 0.9921 540 7536 0.017 0.685 0.702 0.984
1KG_1_115258741 -0.2175 0.0251 21607 2296 1.381 0.195 1.575 0.089
1KG_1_115527488 -0.3964 0 2154 166 0.13 0.011 0.14 0.052
1KG_1_1158675 -0.023 1 919 15869 0.032 1.446 1.479 0.986
1KG_1_117644041 -0.1609 0.0062 15708 462 1.003 0.03 1.033 0.019
1KG_1_118486040 -0.19 0.0037 24921 1537 1.595 0.123 1.719 0.049
1KG_1_11893660 -0.0493 0 22730 890 1.455 0.065 1.52 0.029
1KG_1_12066749 -0.627 0 10608 524 0.674 0.039 0.713 0.037
1KG_1_12343587 -0.0832 1 831 12820 0.03 1.168 1.198 0.984
1KG_1_12632789 -0.1162 1 3531 11588 0.206 1.054 1.259 0.877
1KG_1_12711251 -0.0852 1 778 16667 0.022 1.519 1.542 0.991
1KG_1_1323216 -0.4172 1 505 5220 0.018 0.473 0.491 0.976
1KG_1_14106394 -0.4564 0.1444 8832 2547 0.557 0.225 0.782 0.244
1KG_1_145562155 -0.4368 0.0043 15939 510 1.018 0.034 1.052 0.022

Total number of rows: 298930

Table truncated, full table size 16438 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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