|
Status |
Public on Jan 01, 2016 |
Title |
normal (E_BC_CO_063_5935294032.RO1C01) |
Sample type |
genomic |
|
|
Source name |
31 buffy coat
|
Organism |
Homo sapiens |
Characteristics |
disease state: normal (control) tissue: blood tissue fraction: buffy coat
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
genomic DNA from buffy coat
|
Data processing |
BeadStudio software v3.2 and a novel intensity-based normalization method using technical quality controls (see ralated publication)
|
|
|
Submission date |
Nov 21, 2013 |
Last update date |
Jan 01, 2016 |
Contact name |
panagiotis georgiadis |
E-mail(s) |
panosg@eie.gr
|
Phone |
302107273743
|
Organization name |
NHRF
|
Department |
IBMCB
|
Lab |
Chemical Carcinogenesis
|
Street address |
48 vas costantinou
|
City |
athens |
State/province |
Greece |
ZIP/Postal code |
11635 |
Country |
Greece |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE52635 |
A Composite Framework for the Statistical Analysis of Epidemiological DNA Methylation Data with the Infinium Human Methylation 450K BeadChip |
|