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Status
Public on Mar 16, 2004
Title
germ cells on STO day 1 GPL341
Sample type
RNA
Source name
germ cells from 22 day old rat testis, cultured for 1 day
Organism
Rattus norvegicus
Extracted molecule
total RNA
Description
50 ng total RNA were amplified using two rounds of amplification. Detection calls were calculated using a Tau value of 0.015. Signal intensities were scaled to an average of 250 (scale factor 0.510). Keywords = Rat, testis, germ cells, stem cells, spermatogenesis
Submission date
Nov 10, 2003
Last update date
May 28, 2005
Contact name
Nikolaus Schultz
E-mail(s)
schultz@cbio.mskcc.org
Phone
646-888-2604
Organization name
Memorial Sloan-Kettering Cancer Center
Department
Computational Biology Center
Street address
1275 York Ave, Box 460
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL341
Series (1)
Data table header descriptions
ID_REF
Affymetrix probe id
VALUE
signal intensity
ABS_CALL
present (P), absent (A), marginal (M) call
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
148.9
P
0.003212
AFFX-BioB-M_at
236.6
P
0.000044
AFFX-BioB-3_at
103.5
P
0.000095
AFFX-BioC-5_at
381.7
P
0.000044
AFFX-BioC-3_at
188.1
P
0.000044
AFFX-BioDn-5_at
287.3
P
0.000169
AFFX-BioDn-3_at
1074.3
P
0.000081
AFFX-CreX-5_at
2995.2
P
0.000044
AFFX-CreX-3_at
3216.8
P
0.000044
AFFX-DapX-5_at
9.5
A
0.239063
AFFX-DapX-M_at
16.3
A
0.340661
AFFX-DapX-3_at
1.9
A
0.966323
AFFX-LysX-5_at
18.2
A
0.095667
AFFX-LysX-M_at
19.5
A
0.455413
AFFX-LysX-3_at
2.3
A
0.5
AFFX-PheX-5_at
2.4
A
0.868639
AFFX-PheX-M_at
1.4
A
0.971543
AFFX-PheX-3_at
27
A
0.147939
AFFX-ThrX-5_at
3
A
0.724854
AFFX-ThrX-M_at
8.5
A
0.368438
Total number of rows: 15923 Table truncated, full table size 423 Kbytes .Supplementary file
Size
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File type/resource
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CEL