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Status
Public on Mar 16, 2004
Title
germ cells on STO day 1 GPL342
Sample type
RNA
Source name
germ cells from 22 day old rat testis, cultured for 1 day
Organism
Rattus norvegicus
Extracted molecule
total RNA
Description
50 ng total RNA were amplified using two rounds of amplification. Detection calls were calculated using a Tau value of 0.015. Signal intensities were scaled to an average of 250 (scale factor 1.546). Keywords = Rat, testis, germ cells, stem cells, spermatogenesis
Submission date
Nov 10, 2003
Last update date
May 28, 2005
Contact name
Nikolaus Schultz
E-mail(s)
schultz@cbio.mskcc.org
Phone
646-888-2604
Organization name
Memorial Sloan-Kettering Cancer Center
Department
Computational Biology Center
Street address
1275 York Ave, Box 460
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL342
Series (1)
Data table header descriptions
ID_REF
Affymetrix probe id
VALUE
signal intensity
ABS_CALL
present (P), absent (A), marginal (M) call
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
412.2
P
0.001796
AFFX-BioB-M_at
590.3
P
0.000044
AFFX-BioB-3_at
293.9
P
0.000147
AFFX-BioC-5_at
1038.9
P
0.00007
AFFX-BioC-3_at
564
P
0.000052
AFFX-BioDn-5_at
710.8
P
0.000169
AFFX-BioDn-3_at
2944
P
0.000095
AFFX-CreX-5_at
7536.4
P
0.000044
AFFX-CreX-3_at
8305.8
P
0.000044
AFFX-DapX-5_at
35.6
A
0.0727
AFFX-DapX-M_at
46.4
P
0.023929
AFFX-DapX-3_at
10.9
A
0.772364
AFFX-LysX-5_at
1.8
A
0.969024
AFFX-LysX-M_at
5.4
A
0.852061
AFFX-LysX-3_at
37.1
A
0.123572
AFFX-PheX-5_at
4.6
A
0.978098
AFFX-PheX-M_at
2.5
A
0.969024
AFFX-PheX-3_at
66.5
A
0.41138
AFFX-ThrX-5_at
10.1
A
0.876428
AFFX-ThrX-M_at
24
A
0.368438
Total number of rows: 15333 Table truncated, full table size 407 Kbytes .Supplementary file
Size
Download
File type/resource
GSM12796.CEL.gz
2.5 Mb
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CEL