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Sample GSM12799 Query DataSets for GSM12799
Status Public on Mar 16, 2004
Title germ cells on STO day 10 GPL341
Sample type RNA
 
Source name germ cells from 22 day old rat testis, cultured for 10 days
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description 50 ng total RNA were amplified using two rounds of amplification. Detection calls were calculated using a Tau value of 0.015. Signal intensities were scaled to an average of 250 (scale factor 0.660).
Keywords = Rat, testis, germ cells, stem cells, spermatogenesis
 
Submission date Nov 10, 2003
Last update date May 28, 2005
Contact name Nikolaus Schultz
E-mail(s) schultz@cbio.mskcc.org
Phone 646-888-2604
Organization name Memorial Sloan-Kettering Cancer Center
Department Computational Biology Center
Street address 1275 York Ave, Box 460
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL341
Series (1)
GSE830 Rat germ cells

Data table header descriptions
ID_REF Affymetrix probe id
VALUE signal intensity
ABS_CALL present (P), absent (A), marginal (M) call
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 152.7 P 0.002556
AFFX-BioB-M_at 303 P 0.000044
AFFX-BioB-3_at 169.8 P 0.000044
AFFX-BioC-5_at 460 P 0.00006
AFFX-BioC-3_at 316.7 P 0.000044
AFFX-BioDn-5_at 410.2 P 0.000258
AFFX-BioDn-3_at 1535.2 P 0.000081
AFFX-CreX-5_at 4175.2 P 0.000044
AFFX-CreX-3_at 4325.8 P 0.000044
AFFX-DapX-5_at 14.2 A 0.116113
AFFX-DapX-M_at 7.6 A 0.574038
AFFX-DapX-3_at 4.3 A 0.749204
AFFX-LysX-5_at 4.8 A 0.51489
AFFX-LysX-M_at 22.1 A 0.340661
AFFX-LysX-3_at 0.6 A 0.957038
AFFX-PheX-5_at 5.8 A 0.772364
AFFX-PheX-M_at 1.8 A 0.804734
AFFX-PheX-3_at 22.5 A 0.368438
AFFX-ThrX-5_at 1.8 A 0.868639
AFFX-ThrX-M_at 6.1 A 0.470241

Total number of rows: 15923

Table truncated, full table size 423 Kbytes.




Supplementary file Size Download File type/resource
GSM12799.CEL.gz 2.6 Mb (ftp)(http) CEL

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