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Status
Public on Mar 16, 2004
Title
germ cells on STO day 10 GPL341
Sample type
RNA
Source name
germ cells from 22 day old rat testis, cultured for 10 days
Organism
Rattus norvegicus Extracted molecule
total RNA
Description
50 ng total RNA were amplified using two rounds of amplification. Detection calls were calculated using a Tau value of 0.015. Signal intensities were scaled to an average of 250 (scale factor 0.660).
Submission date
Nov 10, 2003
Last update date
May 28, 2005
Contact name
Nikolaus Schultz
E-mail(s)
schultz@cbio.mskcc.org Phone
646-888-2604
Organization name
Memorial Sloan-Kettering Cancer Center
Department
Computational Biology Center
Street address
1275 York Ave, Box 460
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL341 Series (1)
Data table header descriptions ID_REF Affymetrix probe id
VALUE signal intensity
ABS_CALL present (P), absent (A), marginal (M) call
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
152.7
P
0.002556
AFFX-BioB-M_at
303
P
0.000044
AFFX-BioB-3_at
169.8
P
0.000044
AFFX-BioC-5_at
460
P
0.00006
AFFX-BioC-3_at
316.7
P
0.000044
AFFX-BioDn-5_at
410.2
P
0.000258
AFFX-BioDn-3_at
1535.2
P
0.000081
AFFX-CreX-5_at
4175.2
P
0.000044
AFFX-CreX-3_at
4325.8
P
0.000044
AFFX-DapX-5_at
14.2
A
0.116113
AFFX-DapX-M_at
7.6
A
0.574038
AFFX-DapX-3_at
4.3
A
0.749204
AFFX-LysX-5_at
4.8
A
0.51489
AFFX-LysX-M_at
22.1
A
0.340661
AFFX-LysX-3_at
0.6
A
0.957038
AFFX-PheX-5_at
5.8
A
0.772364
AFFX-PheX-M_at
1.8
A
0.804734
AFFX-PheX-3_at
22.5
A
0.368438
AFFX-ThrX-5_at
1.8
A
0.868639
AFFX-ThrX-M_at
6.1
A
0.470241
15923 423 Kbytes .Supplementary file Size Download File type/resource GSM12799.CEL.gz
2.6 Mb
(ftp) (http) CEL
