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Status
Public on Mar 16, 2004
Title
germ cells on STO day 10 GPL342
Sample type
RNA
Source name
germ cells from 22 day old rat testis, cultured for 10 days
Organism
Rattus norvegicus Extracted molecule
total RNA
Description
50 ng total RNA were amplified using two rounds of amplification. Detection calls were calculated using a Tau value of 0.015. Signal intensities were scaled to an average of 250 (scale factor 1.464).
Submission date
Nov 10, 2003
Last update date
May 28, 2005
Contact name
Nikolaus Schultz
E-mail(s)
schultz@cbio.mskcc.org Phone
646-888-2604
Organization name
Memorial Sloan-Kettering Cancer Center
Department
Computational Biology Center
Street address
1275 York Ave, Box 460
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL342 Series (1)
Data table header descriptions ID_REF Affymetrix probe id
VALUE signal intensity
ABS_CALL present (P), absent (A), marginal (M) call
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
524.9
P
0.003212
AFFX-BioB-M_at
650.2
P
0.000044
AFFX-BioB-3_at
401.6
P
0.000044
AFFX-BioC-5_at
1095.9
P
0.00007
AFFX-BioC-3_at
729.2
P
0.000044
AFFX-BioDn-5_at
972.9
P
0.00034
AFFX-BioDn-3_at
3661.4
P
0.00007
AFFX-CreX-5_at
10228.7
P
0.000044
AFFX-CreX-3_at
11661.1
P
0.000044
AFFX-DapX-5_at
5.5
A
0.544587
AFFX-DapX-M_at
5.2
A
0.48511
AFFX-DapX-3_at
4.1
A
0.921998
AFFX-LysX-5_at
2.3
A
0.699394
AFFX-LysX-M_at
5.7
A
0.814869
AFFX-LysX-3_at
5.2
A
0.58862
AFFX-PheX-5_at
4.2
A
0.973889
AFFX-PheX-M_at
3.5
A
0.804734
AFFX-PheX-3_at
48.3
A
0.354453
AFFX-ThrX-5_at
3.4
A
0.981719
AFFX-ThrX-M_at
30.1
A
0.455413
15333 407 Kbytes .Supplementary file Size Download File type/resource GSM12800.CEL.gz
2.5 Mb
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