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Status
Public on Mar 16, 2004
Title
germ cells on STO day 20 GPL341
Sample type
RNA
Source name
germ cells from 22 day old rat testis, cultured for 20 days
Organism
Rattus norvegicus Extracted molecule
total RNA
Description
50 ng total RNA were amplified using two rounds of amplification. Detection calls were calculated using a Tau value of 0.015. Signal intensities were scaled to an average of 250 (scale factor 0.670).
Submission date
Nov 10, 2003
Last update date
May 28, 2005
Contact name
Nikolaus Schultz
E-mail(s)
schultz@cbio.mskcc.org Phone
646-888-2604
Organization name
Memorial Sloan-Kettering Cancer Center
Department
Computational Biology Center
Street address
1275 York Ave, Box 460
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL341 Series (1)
Data table header descriptions ID_REF Affymetrix probe id
VALUE signal intensity
ABS_CALL present (P), absent (A), marginal (M) call
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
210.8
P
0.004017
AFFX-BioB-M_at
326.5
P
0.000044
AFFX-BioB-3_at
156
P
0.000095
AFFX-BioC-5_at
537.6
P
0.00007
AFFX-BioC-3_at
309.4
P
0.000044
AFFX-BioDn-5_at
414.2
P
0.000127
AFFX-BioDn-3_at
1507.3
P
0.000127
AFFX-CreX-5_at
4801.7
P
0.000044
AFFX-CreX-3_at
4500
P
0.000044
AFFX-DapX-5_at
12.7
P
0.033677
AFFX-DapX-M_at
8.9
A
0.5
AFFX-DapX-3_at
2.7
A
0.868639
AFFX-LysX-5_at
1.7
A
0.712257
AFFX-LysX-M_at
2.8
A
0.834139
AFFX-LysX-3_at
5.8
A
0.559354
AFFX-PheX-5_at
3
A
0.834139
AFFX-PheX-M_at
3.1
A
0.749204
AFFX-PheX-3_at
7.1
A
0.52976
AFFX-ThrX-5_at
2.7
A
0.868639
AFFX-ThrX-M_at
10.5
A
0.275146
15923 422 Kbytes .Supplementary file Size Download File type/resource GSM12801.CEL.gz
2.5 Mb
(ftp) (http) CEL
