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Sample GSM12802 Query DataSets for GSM12802
Status Public on Mar 16, 2004
Title germ cells on STO day 20 GPL342
Sample type RNA
 
Source name germ cells from 22 day old rat testis, cultured for 20 days
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description 50 ng total RNA were amplified using two rounds of amplification. Detection calls were calculated using a Tau value of 0.015. Signal intensities were scaled to an average of 250 (scale factor 1.441).
Keywords = Rat, testis, germ cells, stem cells, spermatogenesis
 
Submission date Nov 10, 2003
Last update date May 28, 2005
Contact name Nikolaus Schultz
E-mail(s) schultz@cbio.mskcc.org
Phone 646-888-2604
Organization name Memorial Sloan-Kettering Cancer Center
Department Computational Biology Center
Street address 1275 York Ave, Box 460
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL342
Series (1)
GSE830 Rat germ cells

Data table header descriptions
ID_REF Affymetrix probe id
VALUE signal intensity
ABS_CALL present (P), absent (A), marginal (M) call
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 468.1 P 0.002023
AFFX-BioB-M_at 743.8 P 0.000044
AFFX-BioB-3_at 325.1 P 0.000052
AFFX-BioC-5_at 1149.9 P 0.00007
AFFX-BioC-3_at 688.4 P 0.000044
AFFX-BioDn-5_at 920.5 P 0.000081
AFFX-BioDn-3_at 3105.3 P 0.000147
AFFX-CreX-5_at 10254.4 P 0.000044
AFFX-CreX-3_at 9816.4 P 0.000044
AFFX-DapX-5_at 29.7 M 0.062929
AFFX-DapX-M_at 40.2 A 0.123572
AFFX-DapX-3_at 3.1 A 0.99238
AFFX-LysX-5_at 9.7 A 0.617401
AFFX-LysX-M_at 4.2 A 0.897835
AFFX-LysX-3_at 10.3 A 0.712257
AFFX-PheX-5_at 4.6 A 0.978098
AFFX-PheX-M_at 4.5 A 0.814869
AFFX-PheX-3_at 62.5 A 0.382599
AFFX-ThrX-5_at 4.5 A 0.834139
AFFX-ThrX-M_at 35 A 0.205732

Total number of rows: 15333

Table truncated, full table size 406 Kbytes.




Supplementary file Size Download File type/resource
GSM12802.CEL.gz 2.5 Mb (ftp)(http) CEL

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