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Sample GSM1280544 Query DataSets for GSM1280544
Status Public on Mar 19, 2014
Title male water (5665175044_F)
Sample type RNA
 
Source name hypothalamus
Organism Rattus norvegicus
Characteristics strain: Wistar
age: PND 7
Sex: male
treatment: water
tissue: hypothalamus
Extracted molecule total RNA
Extraction protocol Total RNA from PND 7 rat pup hypothalami (N = 6/treatment/sex) was isolated using RNeasy Plus Mini Kit (Qiagen, Inc.) according to manufacturer’s instructions and submitted to the Southern California Genotyping Consortium (SCGC) for microarray processing
Label biotin
Label protocol Standard Illumina biotinylation procedure
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation with IlluminaGUI software
 
Submission date Dec 05, 2013
Last update date Mar 19, 2014
Contact name Toni R Pak
E-mail(s) tpak@lumc.edu
Organization name Loyola University Stritch School of Medicine
Department Cell and Molecular Physiology
Street address 2160 S. First Ave
City Maywood
State/province IL
ZIP/Postal code 60153
Country USA
 
Platform ID GPL6101
Series (1)
GSE53028 Parental binge alcohol abuse alters F1 generation hypothalamic gene expression in the absence of direct fetal alcohol exposure

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1369537 312.2621 0.002424242
ILMN_1358051 247.5681 0.003636364
ILMN_1361746 161.4819 0.3442424
ILMN_1352975 1054.643 0
ILMN_1368384 228.2274 0.004848485
ILMN_1355285 192.6072 0.04727273
ILMN_1376898 151.6366 0.5939394
ILMN_1368325 762.8883 0
ILMN_1353563 2428.787 0
ILMN_1348794 156.1687 0.4654545
ILMN_1364273 402.156 0.001212121
ILMN_1369433 193.3643 0.04484848
ILMN_1349007 655.6789 0
ILMN_1374156 191.6725 0.04969697
ILMN_1360232 2808.217 0
ILMN_1355155 6153.009 0
ILMN_1362563 199.1659 0.03151515
ILMN_1355815 221.4486 0.007272727
ILMN_1373215 192.3493 0.04848485
ILMN_1374139 2217.714 0

Total number of rows: 22523

Table truncated, full table size 656 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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