|
| Status |
Public on Mar 31, 2015 |
| Title |
Untreated dendritic cells, biological rep 1 (DC1) |
| Sample type |
RNA |
| |
|
| Source name |
Untreated dendritic cells
|
| Organism |
Homo sapiens |
| Characteristics |
generation: cells generated in vitro from blood monocytes
cell type: dendritic cells
treatment: untreated
|
| Treatment protocol |
No treatment prior to extraction
|
| Growth protocol |
Human dendritic cells (DC) were generated in vitro from CD14+ monocytes purified from peripheral blood from healthy donors and cultured for six days with 100 ng/mL GM-CSF and 10 ng/mL IL-4. After six days of culture, DC were harvested, washed and cultured in the absence or presence of IL-17A, with or without 2ng/mL IFN-gamma. RNA was extracted from untreated DC at day 0 (DC) or DC cultured for 12 days with IL-17A (DC-17), without or with IFN-g (DC-G17).
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| |
|
| Hybridization protocol |
Following fragmentation, 20 ug of cRNA were hybridized for 16hr at 45°C one Genechip human genome U133 Plus 2.0 Affymetrix arrays.
|
| Scan protocol |
The arrays were read with a confocal laser (Genechip laser 3000, Affymetrix)
|
| Description |
DC1
|
| Data processing |
Expression values and absent/present/marginal calls were calculated using the GCOS v1.4 software (Affymetrix). Absolute expression transcript levels were normalized for each chip by globally scaling all probe sets to a target signal intensity of 500.
|
| |
|
| Submission date |
Dec 10, 2013 |
| Last update date |
Mar 31, 2015 |
| Contact name |
Karene Mahtouk |
| Organization name |
CNRS UMR5239
|
| Department |
LBMC
|
| Lab |
Dendritic cells and immune plasticity
|
| Street address |
165 Chemin du Grand Revoyet : BP12
|
| City |
Oullins |
| ZIP/Postal code |
69921 |
| Country |
France |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE53163 |
Expression data from human monocyte-derived dendritic cells treated or not with interleukin 17A (IL-17A) |
|
