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Sample GSM1295003 Query DataSets for GSM1295003
Status Public on Dec 20, 2013
Title U178 -rep3
Sample type RNA
 
Source name U178
Organism Homo sapiens
Characteristics cell line: U178
cell type: cell line
Treatment protocol 48 hrs serum starvation plus or minus EGF
Extracted molecule total RNA
Extraction protocol Trizol
Label streptavidin-Alexa647
Label protocol biotin end-labeled random-octamer oligonucleotide primers
 
Hybridization protocol Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008
Scan protocol Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008
Data processing Quantiles normalization was used
 
Submission date Dec 19, 2013
Last update date Dec 20, 2013
Contact name Frank B Furnari
E-mail(s) ffurnari@ucsd.edu
Phone 858-534-7819
Organization name Ludwig Institute for Cancer Research
Lab Tumor Biology
Street address 9500 Gilman Dr.
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL16744
Series (1)
GSE53504 Suppressio​n of MicroRNA-9 by Mutant EGFR Signaling Induces FOXP1 to Enhance Glioblasto​ma Tumorigeni​city

Data table header descriptions
ID_REF
VALUE Quantile normalized

Data table
ID_REF VALUE
HSHELA01:CONTROL:Plus/Plus 10.81718297
HSTRNL:CONTROL:Plus/Plus 9.869496293
HUMTRAB:CONTROL:Plus/Plus 9.462106319
HUMTRF:CONTROL:Plus/Plus 10.40373188
HUMTRN:CONTROL:Plus/Plus 9.577958971
HUMTRS:CONTROL:Plus/Plus 9.997899766
HUMTRV1A:CONTROL:Plus/Plus 8.472308377
hsa-let-7a:MATURE:Plus/Plus 10.4871872
hsa-let-7a*:MATURE:Plus/Plus 0
hsa-let-7b:MATURE:Plus/Plus 10.64161077
hsa-let-7b*:MATURE:Plus/Plus 3.385593316
hsa-let-7c:MATURE:Plus/Plus 10.59965688
hsa-let-7d:MATURE:Plus/Plus 9.685249501
hsa-let-7d*:MATURE:Plus/Plus 4.272679093
hsa-let-7e:MATURE:Plus/Plus 9.319297792
hsa-let-7e*:MATURE:Plus/Plus 0.92897796
hsa-let-7f:MATURE:Plus/Plus 7.802133888
hsa-let-7f-1*:MATURE:Plus/Plus 0
hsa-let-7f-2*:MATURE:Plus/Plus 0
hsa-let-7g:MATURE:Plus/Plus 8.811183383

Total number of rows: 543

Table truncated, full table size 19 Kbytes.




Supplementary file Size Download File type/resource
GSM1295003_P153_rna33_ucsd_croce_pmt800_81407.gpr.gz 476.1 Kb (ftp)(http) GPR
Processed data included within Sample table
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