NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1295031 Query DataSets for GSM1295031
Status Public on Dec 20, 2013
Title U87 Δ -rep1
Sample type RNA
 
Source name U87 Δ
Organism Homo sapiens
Characteristics cell line: U87 Δ
cell type: cell line overexpressing ΔEGFR
Treatment protocol 48 hrs serum starvation plus or minus EGF
Extracted molecule total RNA
Extraction protocol Trizol
Label streptavidin-Alexa647
Label protocol biotin end-labeled random-octamer oligonucleotide primers
 
Hybridization protocol Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008
Scan protocol Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008
Data processing Quantiles normalization was used
 
Submission date Dec 19, 2013
Last update date Dec 20, 2013
Contact name Frank B Furnari
E-mail(s) ffurnari@ucsd.edu
Phone 858-534-7819
Organization name Ludwig Institute for Cancer Research
Lab Tumor Biology
Street address 9500 Gilman Dr.
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL16744
Series (1)
GSE53504 Suppressio​n of MicroRNA-9 by Mutant EGFR Signaling Induces FOXP1 to Enhance Glioblasto​ma Tumorigeni​city

Data table header descriptions
ID_REF
VALUE Quantile normalized

Data table
ID_REF VALUE
HSHELA01:CONTROL:Plus/Plus 11.56793393
HSTRNL:CONTROL:Plus/Plus 8.22724776
HUMTRAB:CONTROL:Plus/Plus 8.852209209
HUMTRF:CONTROL:Plus/Plus 10.12164909
HUMTRN:CONTROL:Plus/Plus 9.61478609
HUMTRS:CONTROL:Plus/Plus 12.33403861
HUMTRV1A:CONTROL:Plus/Plus 7.802133888
hsa-let-7a:MATURE:Plus/Plus 9.997899766
hsa-let-7a*:MATURE:Plus/Plus 0
hsa-let-7b:MATURE:Plus/Plus 11.32051786
hsa-let-7b*:MATURE:Plus/Plus 0
hsa-let-7c:MATURE:Plus/Plus 10.8632029
hsa-let-7d:MATURE:Plus/Plus 7.749121666
hsa-let-7d*:MATURE:Plus/Plus 0
hsa-let-7e:MATURE:Plus/Plus 9.462106319
hsa-let-7e*:MATURE:Plus/Plus 0
hsa-let-7f:MATURE:Plus/Plus 0
hsa-let-7f-1*:MATURE:Plus/Plus 0
hsa-let-7f-2*:MATURE:Plus/Plus 0
hsa-let-7g:MATURE:Plus/Plus 0

Total number of rows: 543

Table truncated, full table size 18 Kbytes.




Supplementary file Size Download File type/resource
GSM1295031_P310_RNA145_ucsd_croce_pmt800_90407.gpr.gz 460.2 Kb (ftp)(http) GPR
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap