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Sample GSM13 Query DataSets for GSM13
Status Public on Jan 24, 2001
Title NHGRI_HA-A
Sample type RNA
 
Channel 1
Source name melanoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: unknown
Patient sex: female
Patient age: unknown
Passage number: 19
p16 mutation status: ND
Invasive ability: 3.9 +/- 0.5%
Vasculogenic mimicry: +
Gel contraction: -
Cell motility: 211.00 +/- 12.40
Scratch wound (%): 62

See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 09, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 55 138 73 156 4924934 28380.4 13180.7 166 2790.1 369.8 55 138 73 156 2446637 11224.0 5373.4 129 4261.1 329.3 166 2.529 0.1027773 99.000 0.753 5.293 1.996 0.226 1.267
2 660 146 678 164 368021 1880.7 679.3 99 2034.4 197.0 660 146 678 164 577768 2052.0 852.5 96 4094.5 202.2 102 0.917 -0.3381873 99.000 0.753 5.293 1.996 0.226 0.459
3 91 138 109 156 89793 1464.3 391.3 31 2439.8 245.5 91 138 109 156 106674 377.1 220.4 0 4260.9 368.3 31 3.883 0.2889203 99.000 0.753 5.293 1.996 0.226 1.945
4 696 146 714 164 442506 2295.7 862.5 106 2042.6 199.8 696 146 714 164 616036 1935.0 751.4 99 4104.6 207.1 110 1.186 -0.2262143 99.000 0.753 5.293 1.996 0.226 0.594
5 128 138 146 156 1696900 10955.5 4625.7 135 2301.5 203.2 128 138 146 156 928218 3134.4 1292.9 118 4117.3 221.7 136 3.495 0.2432863 99.000 0.753 5.293 1.996 0.226 1.751
6 733 146 751 164 7228221 52280.7 21024.1 141 2066.8 246.0 733 146 751 164 5821054 39673.5 22727.5 116 4093.8 213.8 141 1.318 -0.1804563 99.000 0.753 5.293 1.996 0.226 0.660
7 164 138 182 156 1617115 9942.8 3499.8 136 2308.1 211.6 164 138 182 156 979637 3275.5 1168.5 129 4146.0 231.9 140 3.036 0.1818443 99.000 0.753 5.293 1.996 0.226 1.520
8 769 146 787 164 3213374 28904.1 12687.2 112 1993.7 220.8 769 146 787 164 1996749 15148.3 7396.0 92 4051.2 215.4 112 1.908 -0.0195423 99.000 0.753 5.293 1.996 0.226 0.956
9 201 138 219 156 3708601 21036.1 7569.0 166 2436.0 295.8 201 138 219 156 1938156 8076.1 3227.9 136 4190.7 230.1 166 2.605 0.1156113 99.000 0.753 5.293 1.996 0.226 1.305
10 805 146 823 164 319818 2257.5 941.1 77 1896.0 196.2 805 146 823 164 427790 1589.7 594.1 75 3966.0 195.3 85 1.420 -0.1481303 99.000 0.753 5.293 1.996 0.226 0.711
11 237 138 255 156 1553474 10572.6 3556.5 127 2373.0 263.9 237 138 255 156 1613470 9216.3 3301.7 112 4229.3 229.0 128 1.147 -0.2403323 99.000 0.753 5.293 1.996 0.226 0.575
12 842 146 860 164 479531 5042.7 2763.3 65 1907.0 250.0 842 146 860 164 360382 1297.2 736.9 64 3925.8 204.2 77 3.888 0.2893663 99.000 0.753 5.293 1.996 0.226 1.947
13 48 751 66 769 796493 7223.2 2567.9 88 2373.1 237.7 48 751 66 769 566993 2693.6 1587.0 82 4137.7 205.2 91 2.682 0.1280763 99.000 0.753 5.293 1.996 0.226 1.343
14 664 751 682 769 4833086 35526.2 20957.9 137 1939.6 219.4 664 751 682 769 1909657 10788.6 7580.8 102 4015.0 196.5 137 3.293 0.2172213 99.000 0.753 5.293 1.996 0.226 1.649
15 84 751 102 769 1198739 12355.6 4067.9 88 2263.1 240.0 84 751 102 769 779964 5412.0 1687.9 88 4099.8 196.5 90 2.283 0.0584263 99.000 0.753 5.293 1.996 0.226 1.144
16 700 751 718 769 732464 6492.6 2389.3 94 1926.6 217.0 700 751 718 769 640908 3371.2 1361.5 84 3995.6 191.5 95 1.926 -0.0154733 99.000 0.753 5.293 1.996 0.226 0.965
17 121 751 139 769 859883 9296.2 3052.8 82 2168.9 223.8 121 751 139 769 491976 2465.0 850.9 77 4094.7 193.8 83 3.771 0.2762323 99.000 0.753 5.293 1.996 0.226 1.889
18 737 751 755 769 783406 4811.6 1503.0 120 1941.9 227.9 737 751 755 769 947894 4167.0 1537.8 120 4004.5 191.9 124 1.155 -0.2380723 99.000 0.753 5.293 1.996 0.226 0.578
19 158 751 176 769 618857 4516.1 1962.6 91 2138.3 220.4 158 751 176 769 556442 1871.9 785.7 100 4111.4 210.0 101 2.413 0.0820673 99.000 0.753 5.293 1.996 0.226 1.208
20 773 751 791 769 668247 3815.1 1283.6 117 1945.7 213.1 773 751 791 769 866253 3444.1 1206.0 117 4023.6 200.1 124 1.108 -0.2557073 99.000 0.753 5.293 1.996 0.226 0.555

Total number of rows: 8192

Table truncated, full table size 1316 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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