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Sample GSM1303258 Query DataSets for GSM1303258
Status Public on Jan 09, 2014
Title DRG RSOx3
Sample type RNA
 
Source name saline oxycodone
Organism Rattus norvegicus
Characteristics strain: sprague-dawley
age: 3 months
tissue: dorsal root ganglion
Treatment protocol 10 days of vincristine/saline treatment to induce neuropathic pain followed by 5 days of morphine/oxycodone or saline treatment
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Standard Illumina label protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing All manipulations and statistical analyses were performed with the R freeware. For Illumina beadchip data, all spots with a detection p-value greater than 0.05% were excluded. A two-way ANOVA was performed, using vincristine treatment as the first factor and analgesic treatment as the second factor.
 
Submission date Jan 08, 2014
Last update date Jan 09, 2014
Contact name Karine Thibault
Organization name ESPCI
Lab Laboratoire de Neurobiologie
Street address 10 rue Vauquelin
City Paris
ZIP/Postal code 75005
Country France
 
Platform ID GPL6101
Series (1)
GSE53897 Genome-wide analysis of dorsal root ganglion (DRG) gene expression after morphine or oxycodone treatment

Data table header descriptions
ID_REF
VALUE log2 and quantile normalized
DRG RSOx3.Detection Pval

Data table
ID_REF VALUE DRG RSOx3.Detection Pval
ILMN_1530370 5.428268 0.899394
ILMN_1530315 5.440041 0.878788
ILMN_1530343 5.609702 0.458182
ILMN_1530298 5.492493 0.776970
ILMN_1530312 5.710930 0.221818
ILMN_1530206 5.543757 0.626667
ILMN_1530174 5.613643 0.449697
ILMN_1530328 5.523926 0.684848
ILMN_1530537 5.433328 0.889697
ILMN_1530412 5.615616 0.442424
ILMN_1530540 5.507318 0.733333
ILMN_1530418 5.294168 0.989091
ILMN_1530355 5.411459 0.922424
ILMN_1530438 5.724214 0.198788
ILMN_1530180 5.827880 0.080000
ILMN_1530219 5.919235 0.026667
ILMN_1530535 5.790944 0.120000
ILMN_1530429 5.514066 0.712727
ILMN_1530449 5.557792 0.601212
ILMN_1530434 5.182444 0.995151

Total number of rows: 22517

Table truncated, full table size 683 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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