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Sample GSM1310934 Query DataSets for GSM1310934
Status Public on Dec 31, 2022
Title Healthy Individual 2
Sample type RNA
 
Source name Healthy Individual
Organism Homo sapiens
Characteristics gender: Female
diagnosis: Healthy
tissue: Peripheral Blood
Treatment protocol Total RNA with small RNAs was extracted with QIAGEN miRNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Extracted molecule total RNA
Extraction protocol No specific treatment was performed as the study group included blood samples collected from control and PCOS subjects.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description N2
Data processing The data were normalised using quantile normalisation with GeneSpring GX v 10.0.2
 
Submission date Jan 21, 2014
Last update date Dec 31, 2022
Contact name Malini Laloraya
E-mail(s) laloraya@rgcb.res.in
Phone +91-471-2529462
Organization name Rajiv Gandhi Centre for Biotechnology,
Department Department of Molecular Reproduction,
Lab Female Reproduction and Metabolic Syndromes Laboratory,
Street address Thycaud PO, Poojappura
City Thiruvananthapuram
State/province Kerala
ZIP/Postal code 695 014
Country India
 
Platform ID GPL10558
Series (2)
GSE54248 Microarray mRNA expression profiling of peripheral blood samples in PCOS patients
GSE54250 mRNA/miRNA profiling of peripheral blood samples in PCOS patients

Data table header descriptions
ID_REF
VALUE Average Signal (Normalized)
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 37.2 0.59091
ILMN_2055271 60.1 0.95714
ILMN_1736007 41.8 0.74156
ILMN_2383229 28.5 0.08182
ILMN_1806310 36.8 0.56883
ILMN_1779670 53 0.9026
ILMN_1653355 57.3 0.94026
ILMN_1717783 30.1 0.15714
ILMN_1705025 34.7 0.46364
ILMN_1814316 35 0.47532
ILMN_2359168 34.9 0.47143
ILMN_1731507 38.2 0.63636
ILMN_1787689 53.7 0.91169
ILMN_3241953 389.1 1
ILMN_1745607 27.6 0.05844
ILMN_2136495 29.3 0.11299
ILMN_1668111 42.1 0.74805
ILMN_2295559 38.7 0.66104
ILMN_1735045 35.1 0.47532
ILMN_1680754 53.2 0.9039

Total number of rows: 47323

Table truncated, full table size 1137 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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