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| Status |
Public on Feb 14, 2014 |
| Title |
CONTROL rep1 |
| Sample type |
RNA |
| |
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| Source name |
CONTROL, HepG2
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| Organism |
Homo sapiens |
| Characteristics |
cell line: HepG2 Hepatoma cells
genotype/variation: control
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| Treatment protocol |
Pool of HepG2 cells stably infected with lentiviruses expressing TRIBAL1 (lncRNA) or empty vector (PLVX)
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| Growth protocol |
low glucose DMEM, 10% serum, pen/strep
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| Extracted molecule |
total RNA |
| Extraction protocol |
Roche total RNA isolation kit
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| Label |
N/A
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| Label protocol |
According to the protocols of the Centre for Applied Genomics (The Hospital for Sick Children, Toronto, Ontario, Canada)
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| Hybridization protocol |
According to the protocols of the Centre for Applied Genomics (The Hospital for Sick Children, Toronto, Ontario, Canada)
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| Scan protocol |
According to the protocols of the Centre for Applied Genomics (The Hospital for Sick Children, Toronto, Ontario, Canada)
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| Description |
CONTROL A
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| Data processing |
According to the protocols of the Centre for Applied Genomics (The Hospital for Sick Children, Toronto, Ontario, Canada)
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| Submission date |
Feb 12, 2014 |
| Last update date |
Jan 29, 2024 |
| Contact name |
Ruth McPherson |
| E-mail(s) |
rmcpherson@ottawaheart.ca
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| Organization name |
UOHI
|
| Street address |
40 Ruskin
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| City |
Ottawa |
| State/province |
Ontario |
| ZIP/Postal code |
K1Y4W7 |
| Country |
Canada |
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| Platform ID |
GPL17586 |
| Series (2) |
| GSE54937 |
TRIBAL overexpression in HepG2 cells |
| GSE54957 |
Functional analysis of the TRIB1 associated locus (TRIBAL) linked to plasma triglycerides and coronary artery disease |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
RMA signal |
| Data table |
| ID_REF |
VALUE |
| TC01000001.hg.1 |
7.10691 |
| TC01000002.hg.1 |
6.37624 |
| TC01000003.hg.1 |
4.33619 |
| TC01000004.hg.1 |
4.93256 |
| TC01000005.hg.1 |
10.4647 |
| TC01000006.hg.1 |
12.8647 |
| TC01000007.hg.1 |
13.2325 |
| TC01000008.hg.1 |
10.3158 |
| TC01000009.hg.1 |
5.68771 |
| TC01000010.hg.1 |
5.64355 |
| TC01000011.hg.1 |
7.4222 |
| TC01000012.hg.1 |
6.26796 |
| TC01000013.hg.1 |
10.8643 |
| TC01000014.hg.1 |
5.09571 |
| TC01000015.hg.1 |
7.00583 |
| TC01000016.hg.1 |
7.87667 |
| TC01000017.hg.1 |
6.29064 |
| TC01000018.hg.1 |
8.82035 |
| TC01000019.hg.1 |
7.18933 |
| TC01000020.hg.1 |
7.66024 |
Total number of rows: 70523
Table truncated, full table size 1655 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1326804_HTA2_102313H_RM2_CONTROLA.CEL.gz |
25.7 Mb |
(ftp)(http) |
CEL |
| GSM1326804_HTA2_102313H_RM2_CONTROLA.Gene.rma-gene-full.chp.gz |
458.4 Kb |
(ftp)(http) |
CHP |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
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