 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Feb 14, 2014 |
| Title |
CONTROL rep3 |
| Sample type |
RNA |
| |
|
| Source name |
CONTROL, HepG2
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: HepG2 Hepatoma cells
genotype/variation: control
|
| Treatment protocol |
Pool of HepG2 cells stably infected with lentiviruses expressing TRIBAL1 (lncRNA) or empty vector (PLVX)
|
| Growth protocol |
low glucose DMEM, 10% serum, pen/strep
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Roche total RNA isolation kit
|
| Label |
N/A
|
| Label protocol |
According to the protocols of the Centre for Applied Genomics (The Hospital for Sick Children, Toronto, Ontario, Canada)
|
| |
|
| Hybridization protocol |
According to the protocols of the Centre for Applied Genomics (The Hospital for Sick Children, Toronto, Ontario, Canada)
|
| Scan protocol |
According to the protocols of the Centre for Applied Genomics (The Hospital for Sick Children, Toronto, Ontario, Canada)
|
| Description |
CONTROL C
|
| Data processing |
According to the protocols of the Centre for Applied Genomics (The Hospital for Sick Children, Toronto, Ontario, Canada)
|
| |
|
| Submission date |
Feb 12, 2014 |
| Last update date |
Jan 29, 2024 |
| Contact name |
Ruth McPherson |
| E-mail(s) |
rmcpherson@ottawaheart.ca
|
| Organization name |
UOHI
|
| Street address |
40 Ruskin
|
| City |
Ottawa |
| State/province |
Ontario |
| ZIP/Postal code |
K1Y4W7 |
| Country |
Canada |
| |
|
| Platform ID |
GPL17586 |
| Series (2) |
| GSE54937 |
TRIBAL overexpression in HepG2 cells |
| GSE54957 |
Functional analysis of the TRIB1 associated locus (TRIBAL) linked to plasma triglycerides and coronary artery disease |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
RMA signal |
| Data table |
| ID_REF |
VALUE |
| TC01000001.hg.1 |
7.01123 |
| TC01000002.hg.1 |
6.47937 |
| TC01000003.hg.1 |
4.31374 |
| TC01000004.hg.1 |
4.79895 |
| TC01000005.hg.1 |
9.72162 |
| TC01000006.hg.1 |
12.2721 |
| TC01000007.hg.1 |
12.7413 |
| TC01000008.hg.1 |
9.31147 |
| TC01000009.hg.1 |
4.49567 |
| TC01000010.hg.1 |
5.50836 |
| TC01000011.hg.1 |
6.7952 |
| TC01000012.hg.1 |
6.35089 |
| TC01000013.hg.1 |
10.6923 |
| TC01000014.hg.1 |
5.05218 |
| TC01000015.hg.1 |
6.8569 |
| TC01000016.hg.1 |
7.35786 |
| TC01000017.hg.1 |
6.24669 |
| TC01000018.hg.1 |
8.06294 |
| TC01000019.hg.1 |
7.06704 |
| TC01000020.hg.1 |
7.69688 |
Total number of rows: 70523
Table truncated, full table size 1655 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1326806_HTA2_102313H_RM6_CONTROLC.CEL.gz |
26.0 Mb |
(ftp)(http) |
CEL |
| GSM1326806_HTA2_102313H_RM6_CONTROLC.Gene.rma-gene-full.chp.gz |
458.3 Kb |
(ftp)(http) |
CHP |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
|
|
|
|
 |
