|
| Status |
Public on Aug 07, 2015 |
| Title |
Sample DM15 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Sample DM15
|
| Organism |
Homo sapiens |
| Characteristics |
Stage: Primary Tumor
tissue: FFPE
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Qiagen Dneasy. Manufacturer's instructions.
|
| Label |
Cy5
|
| Label protocol |
Bioprome aCGH genomic labeling kit. Manufacturer's instructions.
|
| |
|
| Channel 2 |
| Source name |
Pooled Normal male genomic DNA
|
| Organism |
Homo sapiens |
| Characteristics |
Sex: Male
tissue: Blood
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Qiagen Dneasy. Manufacturer's instructions.
|
| Label |
Cy3
|
| Label protocol |
Bioprome aCGH genomic labeling kit. Manufacturer's instructions.
|
| |
|
| |
| Hybridization protocol |
Agilent Oligo aCGH hybridization kit. Manufacturer's instructions.
|
| Scan protocol |
Feature Extraction version 9.1 (Agilent Technologies)
|
| Data processing |
Agilent Feature Extraction Software (v 9.1) was used for background subtraction and LOWESS normalization.
|
| |
|
| Submission date |
Feb 24, 2014 |
| Last update date |
Aug 08, 2015 |
| Contact name |
Alan Hunter Shain |
| E-mail(s) |
hshain@gmail.com
|
| Organization name |
University of California San Francisco
|
| Department |
Pathology and Dermatology
|
| Lab |
Boris Bastian
|
| Street address |
555 MISSION BAY SOUTH BLVD RM 282 # 3118
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94158-2156 |
| Country |
USA |
| |
|
| Platform ID |
GPL10123 |
| Series (1) |
|
