|
| Status |
Public on May 14, 2015 |
| Title |
NOD_NAIVE_2 |
| Sample type |
RNA |
| |
|
| Source name |
NOD NAIVE replicate 2
|
| Organism |
Mus musculus |
| Characteristics |
strain: NOD
treatment: NAIVE
tissue: dorsal root ganglion
|
| Treatment protocol |
Total RNA was extracted from naïve and injured DRGs (6 DRGs per sample, 3 mice) across 9 strains and assessed with the Agilent Bioanalyzer (Agilent Technologies). Four biologically distinct replicates were run per sample for a total of 72 arrays.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared with Illumina kit for Illumina arrays
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
NOD NAIVE replicate 2
|
| Data processing |
The data were log2 transformed and normalised using quantile normalisation in R
|
| |
|
| Submission date |
Feb 27, 2014 |
| Last update date |
May 14, 2015 |
| Contact name |
Giovanni Coppola |
| E-mail(s) |
gcoppola@ucla.edu
|
| Phone |
310-794-4172
|
| Organization name |
UCLA
|
| Department |
Psychiatry and Neurology
|
| Lab |
Neurogenetics
|
| Street address |
1524 Gonda, 695 Charles Young Drive South
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095 |
| Country |
USA |
| |
|
| Platform ID |
GPL6885 |
| Series (1) |
| GSE55424 |
Regeneration occurs in the CNS of CAST/Ei mice as a consequence of enhanced Activin signaling |
|
