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Sample GSM1337322 Query DataSets for GSM1337322
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient EB_108 (U133A)
Sample type RNA
 
Source name synovial membrane patient EB_108 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: female
age: 72
clinical status: rheumatoid arthritis
Treatment protocol NSARD, prednisolone
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
EB_108
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Feb 28, 2014
Last update date Mar 05, 2014
Contact name Raimund W Kinne
E-mail(s) raimund.w.kinne@med.uni-jena.de
Phone +49 36691 81228
Organization name Jena University Hospital
Department Department of Orthopedics
Lab Experimental Rheumatology Unit, Waldkrankenhaus Rudolf Elle
Street address Klosterlausnitzer Str. 81
City Eisenberg
ZIP/Postal code 07607
Country Germany
 
Platform ID GPL96
Series (1)
GSE55457 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Jena]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 400 P 0.005643
1053_at 112.7 P 0.001354
117_at 744.1 P 0.000266
121_at 559.8 P 0.006532
1255_g_at 60.4 A 0.162935
1294_at 763 P 0.000219
1316_at 108.3 P 0.003585
1320_at 5.7 A 0.765443
1405_i_at 1453.1 P 0.000491
1431_at 76 P 0.002617
1438_at 64.7 A 0.339558
1487_at 400.4 P 0.021866
1494_f_at 83.6 A 0.098054
1598_g_at 4284.2 P 0.000219
160020_at 628.8 P 0.006532
1729_at 949 P 0.003585
177_at 169.1 P 0.003067
1773_at 56.5 A 0.204022
179_at 282.5 A 0.32083
1861_at 176.3 P 0.02786

Total number of rows: 22283

Table truncated, full table size 593 Kbytes.




Supplementary file Size Download File type/resource
GSM1337322_EB_108.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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