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Status |
Public on Apr 08, 2014 |
Title |
Unrelated individual Ts7 |
Sample type |
SRA |
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Source name |
unrelated individual_T21_primary fibroblasts
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Organism |
Homo sapiens |
Characteristics |
disease/status: Trisomy 21 (T21) tissue: Primary fibroblasts
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Extracted molecule |
total RNA |
Extraction protocol |
Illumina mRNA-Seq Sample Preparation kit Total RNA was collected using the TRIzol® reagent (Life Technologies) following the manufacturer’s instructions.
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2000 |
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Description |
processed data file: final_unr_QN_file.txt
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Data processing |
Basecalling performed with CASAVA version 1.8 Mapping using GEM, default parameters Genome_build: hg19 and mm9 Supplementary_files_format_and_content: final_mouse_QN_file.txt: text file, chromosome, start, end, gene symbol, rpkm values, rpkm values after quantile normalization, log2 fold change (TsT1/TsN1) Supplementary_files_format_and_content: final_QN_4rep_file.sorted.txt: text file, chromosome, start, end, gene type, gene symbol, rpkm values, rpkm values after quantile normalization, log2 fold change Supplementary_files_format_and_content: final_unr_QN_file.txt: text file, chromosome, start, end, ensembl gene ID, gene symbol, rpkm values, rpkm values after quantile normalization, log2 fold change Supplementary_files_format_and_content: Expression_iPS_cells.txt: text file, chromosome, start, end, strand, ensembl gene ID, gene symbol, rpkm values
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Submission date |
Mar 03, 2014 |
Last update date |
Apr 27, 2020 |
Contact name |
Audrey Letourneau |
E-mail(s) |
audrey.letourneau@unige.ch
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Organization name |
University of Geneva Medical School
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Department |
Genetic Medicine and Development
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Street address |
Rue Michel-Servet 1
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City |
Geneva |
ZIP/Postal code |
1211 |
Country |
Switzerland |
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Platform ID |
GPL11154 |
Series (2) |
GSE55426 |
Domains of genomewide gene expression dysregulation in Down syndrome |
GSE55504 |
Domains of genomewide gene expression dysregulation in Down syndrome [RNA-seq] |
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Relations |
Reanalyzed by |
GSE149467 |
BioSample |
SAMN02671058 |
SRA |
SRX480677 |
Supplementary data files not provided |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
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