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| Status |
Public on Sep 12, 2006 |
| Title |
Hela mock 24hr vs. HeLa PLk1319, 24 hr |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
Hela mock 24hr
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
HeLa PLk1319, 24 hr
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
For details please see: Jackson AL, Burchard J, Schelter J, Chau BN, Cleary M, Lim L, and Linsley PS. RNA (2006) 12(7):1179-1187
|
| Data processing |
Local background correction
|
| |
|
| Submission date |
Sep 01, 2006 |
| Last update date |
Sep 13, 2006 |
| Contact name |
Aimee Jackson |
| Organization name |
Regulus Therapeutics
|
| Street address |
1896 Rutherford Rd
|
| City |
Carlsbad |
| State/province |
CA |
| ZIP/Postal code |
92008 |
| Country |
USA |
| |
|
| Platform ID |
GPL3992 |
| Series (1) |
| GSE5814 |
Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity |
|
| Data table header descriptions |
| ID_REF |
Rosetta generated unique probe identifier |
| VALUE |
Corrected (normalized) Log10 Ratio of channels (CH2/CH1) |
| LOGINTENSITY |
Corrected average log intensity of channels |
| INTENSITY1 |
Raw Cy3 intensity (CH1) |
| INTENSITY2 |
Raw Cy5 intensity (CH2) |
| PVALUE |
P-value of LogRatio |
| QUALITY |
1 - if good and non control, 0 - otherwise |
| Data table |
| ID_REF |
VALUE |
LOGINTENSITY |
INTENSITY1 |
INTENSITY2 |
PVALUE |
QUALITY |
| 10023804644 |
0.2450 |
-2.2955 |
0.0038 |
0.0084 |
6.5561e-001 |
1 |
| 10023804645 |
0.0211 |
-0.0561 |
0.8583 |
0.9020 |
6.6777e-001 |
1 |
| 10023804646 |
0.0425 |
-0.5135 |
0.2923 |
0.3220 |
4.9852e-001 |
1 |
| 10023804647 |
-0.0082 |
-1.5479 |
0.0289 |
0.0287 |
9.4041e-001 |
1 |
| 10023804648 |
0.0975 |
-0.3335 |
0.4150 |
0.5204 |
8.1177e-002 |
1 |
| 10023804649 |
-0.0394 |
-1.6140 |
0.0253 |
0.0236 |
7.6310e-001 |
1 |
| 10023804650 |
0.0087 |
-1.8536 |
0.0142 |
0.0139 |
9.6438e-001 |
1 |
| 10023804651 |
-0.0487 |
-1.7793 |
0.0172 |
0.0166 |
8.0177e-001 |
1 |
| 10023804652 |
0.0471 |
-0.1441 |
0.6799 |
0.7588 |
4.2339e-001 |
1 |
| 10023804653 |
-0.0045 |
-1.5172 |
0.0322 |
0.0330 |
9.6868e-001 |
1 |
| 10023804654 |
-0.0946 |
-2.0539 |
0.0106 |
0.0084 |
7.1542e-001 |
1 |
| 10023804655 |
-0.0851 |
0.1634 |
1.6070 |
1.3209 |
8.5566e-002 |
1 |
| 10023804656 |
-0.0680 |
0.4217 |
2.8568 |
2.4422 |
1.9157e-001 |
1 |
| 10023804657 |
-0.0696 |
-0.0745 |
0.9143 |
0.7788 |
1.1489e-001 |
1 |
| 10023804658 |
-0.0365 |
-1.4163 |
0.0418 |
0.0361 |
7.7429e-001 |
1 |
| 10023804659 |
-0.0126 |
0.4986 |
3.2033 |
3.1141 |
7.8581e-001 |
1 |
| 10023804660 |
0.0139 |
-1.0590 |
0.0911 |
0.0959 |
8.3219e-001 |
1 |
| 10023804661 |
-0.0153 |
-1.0785 |
0.0887 |
0.0861 |
8.0132e-001 |
1 |
| 10023804662 |
0.0084 |
1.0353 |
10.7895 |
10.9641 |
9.0917e-001 |
1 |
| 10023804663 |
-0.0046 |
-1.0164 |
0.0981 |
0.0988 |
9.4859e-001 |
1 |
Total number of rows: 23566
Table truncated, full table size 1274 Kbytes.
| Supplementary data files not provided |
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