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| Status |
Public on Sep 12, 2006 |
| Title |
HeLa, mock, 24 hrs vs. HeLa, 1721-PLK-772, 24 hrs |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
HeLa, mock, 24 hrs
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
HeLa, 1721-PLK-772, 24 hrs
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
For details please see: Jackson AL, Burchard J, Schelter J, Chau BN, Cleary M, Lim L, and Linsley PS. RNA (2006) 12(7):1179-1187
|
| Data processing |
Local background correction
|
| |
|
| Submission date |
Sep 01, 2006 |
| Last update date |
Sep 13, 2006 |
| Contact name |
Aimee Jackson |
| Organization name |
Regulus Therapeutics
|
| Street address |
1896 Rutherford Rd
|
| City |
Carlsbad |
| State/province |
CA |
| ZIP/Postal code |
92008 |
| Country |
USA |
| |
|
| Platform ID |
GPL3992 |
| Series (1) |
| GSE5814 |
Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity |
|
| Data table header descriptions |
| ID_REF |
Rosetta generated unique probe identifier |
| VALUE |
Corrected (normalized) Log10 Ratio of channels (CH2/CH1) |
| LOGINTENSITY |
Corrected average log intensity of channels |
| INTENSITY1 |
Raw Cy3 intensity (CH1) |
| INTENSITY2 |
Raw Cy5 intensity (CH2) |
| PVALUE |
P-value of LogRatio |
| QUALITY |
1 - if good and non control, 0 - otherwise |
| Data table |
| ID_REF |
VALUE |
LOGINTENSITY |
INTENSITY1 |
INTENSITY2 |
PVALUE |
QUALITY |
| 10023804644 |
0.0037 |
-2.1791 |
0.0066 |
0.0066 |
9.9697e-001 |
1 |
| 10023804645 |
0.0834 |
-0.0448 |
0.8232 |
0.9970 |
6.4272e-002 |
1 |
| 10023804646 |
0.0749 |
-0.3061 |
0.4539 |
0.5389 |
1.2950e-001 |
1 |
| 10023804647 |
-0.0421 |
-1.4331 |
0.0390 |
0.0352 |
6.0228e-001 |
1 |
| 10023804648 |
0.1052 |
-0.4047 |
0.3532 |
0.4544 |
6.1387e-002 |
1 |
| 10023804649 |
-0.0024 |
-1.4888 |
0.0327 |
0.0322 |
9.8196e-001 |
1 |
| 10023804650 |
-0.0636 |
-1.9073 |
0.0134 |
0.0115 |
7.8069e-001 |
1 |
| 10023804651 |
0.0012 |
-1.8997 |
0.0131 |
0.0123 |
9.9611e-001 |
1 |
| 10023804652 |
-0.0792 |
-0.4236 |
0.4183 |
0.3467 |
1.3532e-001 |
1 |
| 10023804653 |
-0.0420 |
-1.5362 |
0.0309 |
0.0277 |
6.9429e-001 |
1 |
| 10023804654 |
-0.0799 |
-2.1676 |
0.0079 |
0.0063 |
8.2858e-001 |
1 |
| 10023804655 |
0.0063 |
0.0313 |
1.0844 |
1.0954 |
8.9834e-001 |
1 |
| 10023804656 |
-0.0399 |
0.3797 |
2.5294 |
2.3004 |
4.2131e-001 |
1 |
| 10023804657 |
-0.0538 |
-0.2008 |
0.6953 |
0.6068 |
3.2561e-001 |
1 |
| 10023804658 |
0.0597 |
-1.6510 |
0.0210 |
0.0240 |
6.6569e-001 |
1 |
| 10023804659 |
-0.0365 |
0.3190 |
2.1925 |
2.0117 |
4.3724e-001 |
1 |
| 10023804660 |
-0.0442 |
-1.2273 |
0.0631 |
0.0566 |
5.2364e-001 |
1 |
| 10023804661 |
0.0200 |
-1.1608 |
0.0675 |
0.0708 |
7.6645e-001 |
1 |
| 10023804662 |
0.0993 |
1.1248 |
11.8897 |
14.9522 |
3.9982e-002 |
1 |
| 10023804663 |
0.0068 |
-1.0769 |
0.0838 |
0.0843 |
9.3072e-001 |
1 |
Total number of rows: 23566
Table truncated, full table size 1275 Kbytes.
| Supplementary data files not provided |
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