 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Sep 12, 2006 |
| Title |
HeLa, mock, 24 hr vs. HeLa, 193-MAPK14, pos 14 mut, 24 hr, a |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
HeLa, mock, 24 hr
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
HeLa, 193-MAPK14, pos 14 mut, 24 hr, a
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
For details please see: Jackson AL, Burchard J, Schelter J, Chau BN, Cleary M, Lim L, and Linsley PS. RNA (2006) 12(7):1179-1187
|
| Data processing |
Local background correction
|
| |
|
| Submission date |
Sep 01, 2006 |
| Last update date |
Sep 13, 2006 |
| Contact name |
Aimee Jackson |
| Organization name |
Regulus Therapeutics
|
| Street address |
1896 Rutherford Rd
|
| City |
Carlsbad |
| State/province |
CA |
| ZIP/Postal code |
92008 |
| Country |
USA |
| |
|
| Platform ID |
GPL3992 |
| Series (1) |
| GSE5814 |
Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity |
|
| Data table header descriptions |
| ID_REF |
Rosetta generated unique probe identifier |
| VALUE |
Corrected (normalized) Log10 Ratio of channels (CH2/CH1) |
| LOGINTENSITY |
Corrected average log intensity of channels |
| INTENSITY1 |
Raw Cy3 intensity (CH1) |
| INTENSITY2 |
Raw Cy5 intensity (CH2) |
| PVALUE |
P-value of LogRatio |
| QUALITY |
1 - if good and non control, 0 - otherwise |
| Data table |
| ID_REF |
VALUE |
LOGINTENSITY |
INTENSITY1 |
INTENSITY2 |
PVALUE |
QUALITY |
| 10023804644 |
1.5558 |
-2.8453 |
0.0019 |
0.0032 |
5.4040e-001 |
1 |
| 10023804645 |
0.0506 |
0.0979 |
1.1826 |
1.3305 |
4.4449e-001 |
1 |
| 10023804646 |
-0.2665 |
-0.7014 |
0.2709 |
0.1463 |
1.0692e-004 |
1 |
| 10023804647 |
0.0828 |
-1.5119 |
0.0280 |
0.0338 |
7.0294e-001 |
1 |
| 10023804648 |
-0.1781 |
-0.8932 |
0.1575 |
0.1042 |
1.2907e-002 |
1 |
| 10023804649 |
0.0240 |
-1.6717 |
0.0208 |
0.0220 |
8.4655e-001 |
1 |
| 10023804650 |
0.1766 |
-2.1056 |
0.0065 |
0.0096 |
5.6759e-001 |
1 |
| 10023804651 |
0.0755 |
-0.1555 |
0.6404 |
0.7753 |
4.4202e-001 |
1 |
| 10023804652 |
-0.3727 |
-1.2676 |
0.0830 |
0.0352 |
3.5304e-006 |
1 |
| 10023804653 |
0.0689 |
-1.5425 |
0.0267 |
0.0311 |
5.1697e-001 |
1 |
| 10023804654 |
0.0242 |
-2.0546 |
0.0086 |
0.0091 |
9.2786e-001 |
1 |
| 10023804655 |
0.0746 |
-0.1136 |
0.7070 |
0.8402 |
2.6045e-001 |
1 |
| 10023804656 |
-0.0285 |
0.7028 |
5.2284 |
4.8997 |
7.2041e-001 |
1 |
| 10023804657 |
-0.1124 |
-0.3547 |
0.5040 |
0.3891 |
1.1742e-001 |
1 |
| 10023804658 |
-0.0046 |
-2.0898 |
0.0083 |
0.0081 |
9.8802e-001 |
1 |
| 10023804659 |
-0.1712 |
0.3245 |
2.5865 |
1.7349 |
3.6965e-002 |
1 |
| 10023804660 |
0.1144 |
-1.0763 |
0.0752 |
0.1023 |
2.7080e-001 |
1 |
| 10023804661 |
0.5335 |
-0.6921 |
0.1100 |
0.3782 |
4.3021e-014 |
1 |
| 10023804662 |
0.3392 |
1.1484 |
9.5202 |
20.8254 |
5.3418e-009 |
1 |
| 10023804663 |
0.0229 |
-1.1020 |
0.0788 |
0.0822 |
7.5570e-001 |
1 |
Total number of rows: 23566
Table truncated, full table size 1274 Kbytes.
| Supplementary data files not provided |
|
|
|
|
 |
