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| Status |
Public on Sep 12, 2006 |
| Title |
HeLa, mock, 24 hr vs. HeLa, 193-MAPK14, pos 2 mut, 24 hr, c |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
HeLa, mock, 24 hr
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
HeLa, 193-MAPK14, pos 2 mut, 24 hr, c
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
For details please see: Jackson AL, Burchard J, Schelter J, Chau BN, Cleary M, Lim L, and Linsley PS. RNA (2006) 12(7):1179-1187
|
| Data processing |
Local background correction
|
| |
|
| Submission date |
Sep 01, 2006 |
| Last update date |
Sep 13, 2006 |
| Contact name |
Aimee Jackson |
| Organization name |
Regulus Therapeutics
|
| Street address |
1896 Rutherford Rd
|
| City |
Carlsbad |
| State/province |
CA |
| ZIP/Postal code |
92008 |
| Country |
USA |
| |
|
| Platform ID |
GPL3992 |
| Series (1) |
| GSE5814 |
Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity |
|
| Data table header descriptions |
| ID_REF |
Rosetta generated unique probe identifier |
| VALUE |
Corrected (normalized) Log10 Ratio of channels (CH2/CH1) |
| LOGINTENSITY |
Corrected average log intensity of channels |
| INTENSITY1 |
Raw Cy3 intensity (CH1) |
| INTENSITY2 |
Raw Cy5 intensity (CH2) |
| PVALUE |
P-value of LogRatio |
| QUALITY |
1 - if good and non control, 0 - otherwise |
| Data table |
| ID_REF |
VALUE |
LOGINTENSITY |
INTENSITY1 |
INTENSITY2 |
PVALUE |
QUALITY |
| 10023804644 |
0.2840 |
-2.3440 |
0.0065 |
0.0084 |
7.3292e-001 |
1 |
| 10023804645 |
-0.0568 |
0.0274 |
1.1378 |
0.9980 |
3.2512e-001 |
1 |
| 10023804646 |
0.0321 |
-0.4081 |
0.3767 |
0.4055 |
4.9945e-001 |
1 |
| 10023804647 |
0.1079 |
-1.8015 |
0.0158 |
0.0183 |
5.8319e-001 |
1 |
| 10023804648 |
-0.0204 |
-0.6481 |
0.2307 |
0.2199 |
6.7128e-001 |
1 |
| 10023804649 |
0.0909 |
-1.6879 |
0.0190 |
0.0227 |
5.1328e-001 |
1 |
| 10023804650 |
0.1042 |
-1.8687 |
0.0127 |
0.0154 |
5.8931e-001 |
1 |
| 10023804651 |
-0.0001 |
-0.1914 |
0.6439 |
0.6446 |
9.9911e-001 |
1 |
| 10023804652 |
-0.2263 |
-1.1270 |
0.0969 |
0.0576 |
1.0781e-004 |
1 |
| 10023804653 |
0.1437 |
-1.8351 |
0.0136 |
0.0179 |
4.0766e-001 |
1 |
| 10023804654 |
0.0510 |
-2.2847 |
0.0049 |
0.0057 |
8.8599e-001 |
1 |
| 10023804655 |
0.0860 |
-0.1663 |
0.6184 |
0.7590 |
1.4223e-001 |
1 |
| 10023804656 |
-0.2292 |
0.4582 |
3.7459 |
2.2155 |
5.1945e-005 |
1 |
| 10023804657 |
0.0061 |
-0.2160 |
0.6038 |
0.6125 |
8.9797e-001 |
1 |
| 10023804658 |
0.0891 |
-2.1600 |
0.0064 |
0.0076 |
7.4372e-001 |
1 |
| 10023804659 |
0.0047 |
0.4515 |
2.8194 |
2.8440 |
9.3109e-001 |
1 |
| 10023804660 |
0.0090 |
-1.4379 |
0.0388 |
0.0396 |
9.1937e-001 |
1 |
| 10023804661 |
0.2013 |
-0.8100 |
0.1249 |
0.1966 |
7.0843e-003 |
1 |
| 10023804662 |
0.0358 |
0.8634 |
7.0138 |
7.6108 |
5.3144e-001 |
1 |
| 10023804663 |
0.0369 |
-1.2776 |
0.0528 |
0.0581 |
6.4193e-001 |
1 |
Total number of rows: 23566
Table truncated, full table size 1274 Kbytes.
| Supplementary data files not provided |
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