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| Status |
Public on Sep 12, 2006 |
| Title |
HeLa, mock, 24 hr vs. HeLa, 193-MAPK14, pos 10 mut, 24 hr, b |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
HeLa, mock, 24 hr
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
HeLa, 193-MAPK14, pos 10 mut, 24 hr, b
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
For details please see: Jackson AL, Burchard J, Schelter J, Chau BN, Cleary M, Lim L, and Linsley PS. RNA (2006) 12(7):1179-1187
|
| Data processing |
Local background correction
|
| |
|
| Submission date |
Sep 01, 2006 |
| Last update date |
Sep 13, 2006 |
| Contact name |
Aimee Jackson |
| Organization name |
Regulus Therapeutics
|
| Street address |
1896 Rutherford Rd
|
| City |
Carlsbad |
| State/province |
CA |
| ZIP/Postal code |
92008 |
| Country |
USA |
| |
|
| Platform ID |
GPL3992 |
| Series (1) |
| GSE5814 |
Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity |
|
| Data table header descriptions |
| ID_REF |
Rosetta generated unique probe identifier |
| VALUE |
Corrected (normalized) Log10 Ratio of channels (CH2/CH1) |
| LOGINTENSITY |
Corrected average log intensity of channels |
| INTENSITY1 |
Raw Cy3 intensity (CH1) |
| INTENSITY2 |
Raw Cy5 intensity (CH2) |
| PVALUE |
P-value of LogRatio |
| QUALITY |
1 - if good and non control, 0 - otherwise |
| Data table |
| ID_REF |
VALUE |
LOGINTENSITY |
INTENSITY1 |
INTENSITY2 |
PVALUE |
QUALITY |
| 10023804644 |
-0.0679 |
-2.1064 |
0.0085 |
0.0075 |
7.7031e-001 |
1 |
| 10023804645 |
0.1091 |
0.0435 |
0.9797 |
1.2618 |
2.1548e-002 |
1 |
| 10023804646 |
-0.1581 |
-0.4666 |
0.4100 |
0.2846 |
2.4522e-003 |
1 |
| 10023804647 |
-0.0004 |
-1.3182 |
0.0484 |
0.0483 |
9.9624e-001 |
1 |
| 10023804648 |
-0.0814 |
-0.6387 |
0.2524 |
0.2092 |
8.1080e-002 |
1 |
| 10023804649 |
0.0137 |
-1.3897 |
0.0402 |
0.0415 |
8.3140e-001 |
1 |
| 10023804650 |
0.0139 |
-1.7225 |
0.0187 |
0.0192 |
8.8543e-001 |
1 |
| 10023804651 |
0.0530 |
-0.0484 |
0.8421 |
0.9527 |
2.8398e-001 |
1 |
| 10023804652 |
-0.0298 |
-1.0330 |
0.0961 |
0.0896 |
6.5667e-001 |
1 |
| 10023804653 |
0.0141 |
-1.2962 |
0.0507 |
0.0525 |
8.3743e-001 |
1 |
| 10023804654 |
-0.0212 |
-1.7577 |
0.0179 |
0.0172 |
8.5604e-001 |
1 |
| 10023804655 |
0.0941 |
0.0131 |
0.9249 |
1.1487 |
4.4797e-002 |
1 |
| 10023804656 |
-0.1055 |
0.6064 |
4.5789 |
3.5983 |
3.0850e-002 |
1 |
| 10023804657 |
0.0065 |
-0.0909 |
0.8055 |
0.8175 |
9.0681e-001 |
1 |
| 10023804658 |
-0.0168 |
-1.8378 |
0.0150 |
0.0143 |
8.9454e-001 |
1 |
| 10023804659 |
-0.0755 |
0.4805 |
3.3058 |
2.7773 |
9.2277e-002 |
1 |
| 10023804660 |
0.0587 |
-0.9086 |
0.1198 |
0.1383 |
2.8939e-001 |
1 |
| 10023804661 |
0.1555 |
-0.7190 |
0.1597 |
0.2285 |
1.8161e-003 |
1 |
| 10023804662 |
0.2434 |
1.0916 |
9.3213 |
16.3982 |
5.4126e-004 |
1 |
| 10023804663 |
0.0085 |
-0.9168 |
0.1209 |
0.1227 |
8.8997e-001 |
1 |
Total number of rows: 23566
Table truncated, full table size 1272 Kbytes.
| Supplementary data files not provided |
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