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| Status |
Public on Sep 12, 2006 |
| Title |
HeLa, mock, 24 hr vs. HeLa, PIK3CB-6338, 24 hr |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
HeLa, mock, 24 hr
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
HeLa, PIK3CB-6338, 24 hr
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
For details please see: Jackson AL, Burchard J, Schelter J, Chau BN, Cleary M, Lim L, and Linsley PS. RNA (2006) 12(7):1179-1187
|
| Data processing |
Local background correction
|
| |
|
| Submission date |
Sep 01, 2006 |
| Last update date |
Sep 13, 2006 |
| Contact name |
Aimee Jackson |
| Organization name |
Regulus Therapeutics
|
| Street address |
1896 Rutherford Rd
|
| City |
Carlsbad |
| State/province |
CA |
| ZIP/Postal code |
92008 |
| Country |
USA |
| |
|
| Platform ID |
GPL3992 |
| Series (1) |
| GSE5814 |
Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity |
|
| Data table header descriptions |
| ID_REF |
Rosetta generated unique probe identifier |
| VALUE |
Corrected (normalized) Log10 Ratio of channels (CH2/CH1) |
| LOGINTENSITY |
Corrected average log intensity of channels |
| INTENSITY1 |
Raw Cy3 intensity (CH1) |
| INTENSITY2 |
Raw Cy5 intensity (CH2) |
| PVALUE |
P-value of LogRatio |
| QUALITY |
1 - if good and non control, 0 - otherwise |
| Data table |
| ID_REF |
VALUE |
LOGINTENSITY |
INTENSITY1 |
INTENSITY2 |
PVALUE |
QUALITY |
| 10023804644 |
0.0681 |
-1.9206 |
0.0113 |
0.0129 |
6.2310e-001 |
1 |
| 10023804645 |
0.0546 |
0.1341 |
1.2821 |
1.4510 |
3.0330e-001 |
1 |
| 10023804646 |
0.0847 |
-0.3437 |
0.4111 |
0.4996 |
5.4700e-002 |
1 |
| 10023804647 |
-0.0159 |
-1.2869 |
0.0527 |
0.0508 |
8.2789e-001 |
1 |
| 10023804648 |
0.0621 |
-0.6024 |
0.2328 |
0.2684 |
2.0701e-001 |
1 |
| 10023804649 |
-0.0184 |
-1.3742 |
0.0432 |
0.0414 |
7.1960e-001 |
1 |
| 10023804650 |
-0.0457 |
-1.6041 |
0.0262 |
0.0237 |
6.0273e-001 |
1 |
| 10023804651 |
-0.2308 |
-0.2187 |
0.7888 |
0.4639 |
5.9777e-006 |
1 |
| 10023804652 |
0.0149 |
-0.8558 |
0.1375 |
0.1420 |
8.4014e-001 |
1 |
| 10023804653 |
-0.0059 |
-1.0919 |
0.0815 |
0.0804 |
9.0231e-001 |
1 |
| 10023804654 |
0.0087 |
-1.3981 |
0.0397 |
0.0404 |
8.9648e-001 |
1 |
| 10023804655 |
-0.0320 |
-0.0842 |
0.8548 |
0.7958 |
5.8775e-001 |
1 |
| 10023804656 |
0.0294 |
0.7289 |
5.1790 |
5.5439 |
5.7602e-001 |
1 |
| 10023804657 |
-0.1127 |
-0.2505 |
0.6417 |
0.4934 |
4.2976e-002 |
1 |
| 10023804658 |
-0.0058 |
-1.6590 |
0.0237 |
0.0234 |
9.5406e-001 |
1 |
| 10023804659 |
-0.0213 |
0.4470 |
2.8715 |
2.7364 |
7.4830e-001 |
1 |
| 10023804660 |
-0.0722 |
-0.9273 |
0.1322 |
0.1111 |
1.7845e-001 |
1 |
| 10023804661 |
-0.0040 |
-0.8017 |
0.1589 |
0.1572 |
9.3944e-001 |
1 |
| 10023804662 |
-0.0126 |
1.0329 |
10.9624 |
10.6524 |
8.5677e-001 |
1 |
| 10023804663 |
-0.0286 |
-0.9261 |
0.1242 |
0.1152 |
6.3808e-001 |
1 |
Total number of rows: 23566
Table truncated, full table size 1274 Kbytes.
| Supplementary data files not provided |
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