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Status
Public on Sep 07, 2006
Title
HeLa, mock, 18 hr vs. HeLa, MPHOSPH1-202, unmodified, 100nM, 18 hr
Sample type
RNA
Channel 1 Source name
HeLa
Organism
Homo sapiens Characteristics
cell line: HeLa
Extracted molecule
total RNA
Label
Cy3
Channel 2 Source name
HeLa
Organism
Homo sapiens Characteristics
cell line: HeLa
Extracted molecule
total RNA
Label
Cy5
Description
For details please see: Jackson AL, Burchard J, Leake D, Reynolds A, Schelter J, Guo J, Johnson JM, Lim L, Karpilow J, Nichols K, Marshall W, Kvorova A, and Linsley PS. RNA (2006) 12(7):1197-1205
Data processing
Local background correction
Submission date
Sep 01, 2006
Last update date
Jul 22, 2009
Contact name
Aimee Jackson
Organization name
Regulus Therapeutics
Street address
1896 Rutherford Rd
City
Carlsbad
State/province
CA
ZIP/Postal code
92008
Country
USA
Platform ID
GPL3992 Series (1)
GSE5769 Position-specific chemical modification of siRNAs reduces "off-target" transcript silencing
Data table header descriptions ID_REF Rosetta generated unique probe identifier
VALUE same as UNF_VALUE but with flagged values removed: Corrected (normalized) Log10 Ratio of channels (CH2/CH1)
LOGINTENSITY Corrected average log intensity of channels
INTENSITY1 Raw Cy3 intensity (CH1)
INTENSITY2 Raw Cy5 intensity (CH2)
PVALUE P-value of LogRatio
QUALITY 1 - if good and non control, 0 - otherwise
UNF_VALUE Corrected (normalized) Log10 Ratio of channels (CH2/CH1)
Data table ID_REF VALUE LOGINTENSITY INTENSITY1 INTENSITY2 PVALUE QUALITY UNF_VALUE 10023804644
-0.2561
-2.3295
0.0081
0.0046
6.7804e-001
1
-0.2561
10023804645
0.0607
0.0738
1.1081
1.2738
1.7942e-001
1
0.0607
10023804646
-0.1076
-0.2967
0.5716
0.4462
2.2680e-002
1
-0.1076
10023804647
0.0030
-1.7170
0.0193
0.0195
9.7741e-001
1
0.0030
10023804648
-0.1078
-0.4294
0.4212
0.3287
2.1328e-002
1
-0.1078
10023804649
0.0220
-1.5679
0.0267
0.0281
7.9490e-001
1
0.0220
10023804650
0.1605
-1.8593
0.0117
0.0170
2.1593e-001
1
0.1605
10023804651
-0.0172
-1.9254
0.0125
0.0122
9.3957e-001
1
-0.0172
10023804652
-0.3185
-0.7867
0.2359
0.1133
2.2848e-008
1
-0.3185
10023804653
0.0080
-1.6558
0.0220
0.0224
9.2998e-001
1
0.0080
10023804654
0.1049
-2.0602
0.0085
0.0104
6.9770e-001
1
0.1049
10023804655
0.0356
0.0065
0.9748
1.0579
4.2315e-001
1
0.0356
10023804656
0.0447
0.3958
2.3682
2.6254
3.0907e-001
1
0.0447
10023804657
0.0094
-0.0583
0.8661
0.8864
8.4554e-001
1
0.0094
10023804658
0.0451
-1.5492
0.0271
0.0301
6.2536e-001
1
0.0451
10023804659
-0.0759
0.5011
3.4808
2.9032
2.4577e-001
1
-0.0759
10023804660
0.0699
-1.2823
0.0482
0.0566
2.2358e-001
1
0.0699
10023804661
-0.0092
-1.1829
0.0674
0.0654
8.9954e-001
1
-0.0092
10023804662
0.3042
1.2078
11.3648
22.9416
2.8183e-006
1
0.3042
10023804663
0.0395
-1.1240
0.0721
0.0787
5.5648e-001
1
0.0395
23570 1443 Kbytes .Supplementary data files not provided Processed data included within Sample table
