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Status
Public on Sep 07, 2006
Title
HeLa, mock, 20 hr vs. HeLa, 193-MAPK14, unmodified, 20 hr
Sample type
RNA
Channel 1 Source name
HeLa
Organism
Homo sapiens Characteristics
cell line: HeLa
Extracted molecule
total RNA
Label
Cy3
Channel 2 Source name
HeLa
Organism
Homo sapiens Characteristics
cell line: HeLa
Extracted molecule
total RNA
Label
Cy5
Description
For details please see: Jackson AL, Burchard J, Leake D, Reynolds A, Schelter J, Guo J, Johnson JM, Lim L, Karpilow J, Nichols K, Marshall W, Kvorova A, and Linsley PS. RNA (2006) 12(7):1197-1205
Data processing
Local background correction
Submission date
Sep 01, 2006
Last update date
Jul 22, 2009
Contact name
Aimee Jackson
Organization name
Regulus Therapeutics
Street address
1896 Rutherford Rd
City
Carlsbad
State/province
CA
ZIP/Postal code
92008
Country
USA
Platform ID
GPL3992 Series (1)
GSE5769 Position-specific chemical modification of siRNAs reduces "off-target" transcript silencing
Data table header descriptions ID_REF Rosetta generated unique probe identifier
VALUE same as UNF_VALUE but with flagged values removed: Corrected (normalized) Log10 Ratio of channels (CH2/CH1)
LOGINTENSITY Corrected average log intensity of channels
INTENSITY1 Raw Cy3 intensity (CH1)
INTENSITY2 Raw Cy5 intensity (CH2)
PVALUE P-value of LogRatio
QUALITY 1 - if good and non control, 0 - otherwise
UNF_VALUE Corrected (normalized) Log10 Ratio of channels (CH2/CH1)
Data table ID_REF VALUE LOGINTENSITY INTENSITY1 INTENSITY2 PVALUE QUALITY UNF_VALUE 10023804644
-0.0998
-2.4551
0.0063
0.0054
8.6470e-001
1
-0.0998
10023804645
-0.0617
0.0774
1.2842
1.1149
3.3638e-001
1
-0.0617
10023804646
0.0443
-0.4020
0.3772
0.4182
5.4593e-001
1
0.0443
10023804647
-0.0791
-1.6671
0.0235
0.0199
5.3069e-001
1
-0.0791
10023804648
0.0584
-0.6292
0.2195
0.2517
3.1262e-001
1
0.0584
10023804649
-0.0195
-1.6804
0.0214
0.0204
8.3131e-001
1
-0.0195
10023804650
0.0363
-1.9981
0.0097
0.0104
8.3505e-001
1
0.0363
10023804651
-0.0099
-0.2748
0.5373
0.5284
8.9250e-001
1
-0.0099
10023804652
-0.1112
-1.0884
0.0928
0.0718
3.4603e-002
1
-0.1112
10023804653
-0.0364
-1.6954
0.0210
0.0195
7.3707e-001
1
-0.0364
10023804654
-0.0816
-1.9180
0.0132
0.0115
6.8248e-001
1
-0.0816
10023804655
0.0509
-0.1470
0.6723
0.7572
4.1054e-001
1
0.0509
10023804656
-0.0791
0.7014
5.5113
4.5965
2.0232e-001
1
-0.0791
10023804657
0.0440
-0.2369
0.5507
0.6133
5.2990e-001
1
0.0440
10023804658
-0.2092
-1.9616
0.0137
0.0093
3.9927e-001
1
-0.2092
10023804659
0.0363
0.5449
3.3620
3.6857
6.3927e-001
1
0.0363
10023804660
-0.1117
-1.4243
0.0444
0.0342
4.0864e-001
1
-0.1117
10023804661
0.1800
-0.9971
0.0818
0.1239
3.3959e-004
1
0.1800
10023804662
0.0680
1.0761
11.0160
12.9030
2.0857e-001
1
0.0680
10023804663
-0.0311
-1.3380
0.0488
0.0455
6.8062e-001
1
-0.0311
23570 1445 Kbytes .Supplementary data files not provided Processed data included within Sample table
