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Sample GSM134548 Query DataSets for GSM134548
Status Public on Sep 07, 2006
Title HeLa, mock, 24hr vs. HeLa, MAPK14-193, unmodified, 10nM, 24 hr
Sample type RNA
 
Channel 1
Source name HeLa
Organism Homo sapiens
Characteristics cell line: HeLa
conditions: mock, 24hr
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name HeLa
Organism Homo sapiens
Characteristics cell line: HeLa
conditions: MAPK14-193, unmodified, 10nM, 24 hr
Extracted molecule total RNA
Label Cy5
 
 
Description For details please see: Jackson AL, Burchard J, Leake D, Reynolds A, Schelter J, Guo J, Johnson JM, Lim L, Karpilow J, Nichols K, Marshall W, Kvorova A, and Linsley PS. RNA (2006) 12(7):1197-1205
Data processing Local background correction
 
Submission date Sep 01, 2006
Last update date Jul 22, 2009
Contact name Aimee Jackson
Organization name Regulus Therapeutics
Street address 1896 Rutherford Rd
City Carlsbad
State/province CA
ZIP/Postal code 92008
Country USA
 
Platform ID GPL3992
Series (1)
GSE5769 Position-specific chemical modification of siRNAs reduces "off-target" transcript silencing

Data table header descriptions
ID_REF Rosetta generated unique probe identifier
VALUE same as UNF_VALUE but with flagged values removed: Corrected (normalized) Log10 Ratio of channels (CH2/CH1)
LOGINTENSITY Corrected average log intensity of channels
INTENSITY1 Raw Cy3 intensity (CH1)
INTENSITY2 Raw Cy5 intensity (CH2)
PVALUE P-value of LogRatio
QUALITY 1 - if good and non control, 0 - otherwise
UNF_VALUE Corrected (normalized) Log10 Ratio of channels (CH2/CH1)

Data table
ID_REF VALUE LOGINTENSITY INTENSITY1 INTENSITY2 PVALUE QUALITY UNF_VALUE
10023804644 -0.0639 -1.9203 0.0131 0.0114 6.8257e-001 1 -0.0639
10023804645 -0.0514 0.0630 1.2270 1.0925 3.4647e-001 1 -0.0514
10023804646 0.0546 -0.3562 0.4139 0.4700 2.6183e-001 1 0.0546
10023804647 0.0516 -1.4617 0.0326 0.0370 5.8544e-001 1 0.0516
10023804648 0.0538 -0.5312 0.2771 0.3141 2.6230e-001 1 0.0538
10023804649 0.0209 -1.4810 0.0324 0.0340 8.1104e-001 1 0.0209
10023804650 0.0379 -1.6458 0.0217 0.0237 5.9157e-001 1 0.0379
10023804651 -0.0182 -0.0459 0.9214 0.8837 6.7947e-001 1 -0.0182
10023804652 -0.0339 -0.9037 0.1304 0.1202 5.3737e-001 1 -0.0339
10023804653 0.0251 -1.4373 0.0362 0.0382 7.3253e-001 1 0.0251
10023804654 -0.0030 -1.9510 0.0116 0.0116 9.8561e-001 1 -0.0030
10023804655 0.0408 -0.0197 0.9122 1.0042 4.3037e-001 1 0.0408
10023804656 -0.0594 0.6759 5.0837 4.4441 2.5069e-001 1 -0.0594
10023804657 0.0157 -0.0870 0.8053 0.8339 7.5313e-001 1 0.0157
10023804658 0.0591 -1.9531 0.0107 0.0120 7.1738e-001 1 0.0591
10023804659 0.0491 0.5897 3.6826 4.1172 3.3051e-001 1 0.0491
10023804660 -0.0109 -1.1322 0.0767 0.0749 8.2684e-001 1 -0.0109
10023804661 0.0675 -0.8086 0.1454 0.1699 1.3759e-001 1 0.0675
10023804662 0.0018 0.9992 9.9600 10.0547 9.7800e-001 1 0.0018
10023804663 0.0183 -1.0143 0.0980 0.1001 8.0586e-001 1 0.0183

Total number of rows: 23570

Table truncated, full table size 1444 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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