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Sample GSM134581 Query DataSets for GSM134581
Status Public on May 08, 2008
Title Pig melanocyte cell line PigMel
Sample type SAGE
Anchor Sau3A
Tag Count 11254
Tag Length 10
 
Source name PigMel P37, normal melanocyte cell line derived from pig skin
Organism Sus scrofa
Characteristics The non transformed pigmented melanocyte cell line PigMel was used at passage 37 for the SAGE library.
Growth protocol Culture conditions of the PigMel cell line are described by Julé et al., in Pigment Cell Research 16:407-410, 2003.
Extracted molecule polyA RNA
Extraction protocol Dynabead mRNA direct kit
 
Description Library was generated using the SAGE adaptation for downsized extracts (SADE) method (Virlon et al., P.N.A.S. 96:15286-15291, 1999). Cell lysates were centrifugated to discard melanin.
Data processing SAGE 2002 version 4.5 software
 
Submission date Sep 05, 2006
Last update date Nov 19, 2008
Contact name Giorgia Egidy
E-mail(s) gegidy@vet-alfort.fr
Phone 33 1 4396 7002
Fax 33 1 4396 7169
Organization name INRA-ENVA
Department UMR955
Lab Génétique Moléculaire et Cellulaire
Street address 7, ave Gral de Gaulle
City Maisons-Alfort
ZIP/Postal code 94704
Country France
 
Platform ID GPL4262
Series (1)
GSE5982 Gene expression in melanocytes and metastases melanoma cells from the pig

Data table header descriptions
TAG SauIIIA melanocyte tags
COUNT
TPM tags per million

Data table
TAG COUNT TPM
ACCCGCAATA 368 32699.48
GATTGCGGGG 100 8885.73
GCCTGGACCA 92 8174.87
ACCCTGGCTG 90 7997.16
AACAGACTTA 80 7108.58
GACAGGTTCA 76 6753.15
CAGTGTTGCA 71 6308.87
TTATTTGTGA 59 5242.58
TTTGCTGGCA 59 5242.58
AACCTAATTA 58 5153.72
GGGTTGCTCA 58 5153.72
AAGTGTGTGG 52 4620.58
GTCGTTCTGG 52 4620.58
AAGGGTGTTA 51 4531.72
AAAGCAGCAG 48 4265.15
TGGAGTCTGG 48 4265.15
ATAAGTTTTG 45 3998.58
AACTCAATAA 44 3909.72
AAGCGTGCTT 43 3820.86
AAGTTTAAAT 43 3820.86

Total number of rows: 5466

Table truncated, full table size 102 Kbytes.




Supplementary data files not provided

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