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Sample GSM1346186

Query DataSets for GSM1346186

Status

Public on Sep 01, 2014

Title

eoe_1

Sample type

RNA

Source name

Esophageal mucosa

Organism

Homo sapiens

Characteristics

age_years: 12.4
gender: female
eos/hpf: 50

Extracted molecule

total RNA

Extraction protocol

Total RNA was isolated using mirVana miRNA Isolation Kit, with phenol by Life Technologies. RNA was eluted in 100 uL of the kit elution buffer.

Label

N/A

Label protocol

N/A

Hybridization protocol

N/A

Scan protocol

N/A

Data processing

Raw data was normalized by means of calculated normalization factors based on sum of positive controls and sum of microRNA counts per NanoString Technologies.
MicroRNA with counts greater than background (average - 2 standard deviations) were considered detectable.

Submission date

Mar 11, 2014

Last update date

Sep 01, 2014

Contact name

Calies Menard-Katcher

Organization name

University of Colorado School of Medicine

Department

Pediatrics

Street address

13123 E. 16th St, B290

City

Aurora

State/province

ZIP/Postal code

80045

Country

USA

Platform ID

GPL16142

Series (2)

GSE55794	Nanostring nCounter human miRNA assay (v1) of eosinophilic esophagitis
GSE55795	MicroRNA assays of eosinophilic esophagitis

Data table header descriptions
ID_REF
VALUE	Normalized counts

Data table
ID_REF	VALUE
hsa-let-7a	1841
hsa-let-7b	539
hsa-let-7c	339
hsa-let-7d	370
hsa-let-7e	50
hsa-let-7f	641
hsa-let-7g	884
hsa-let-7i	274
hsa-miR-1	11
hsa-miR-7	5
hsa-miR-9	10
hsa-miR-10a	40
hsa-miR-10b	16
hsa-miR-15a	478
hsa-miR-15b	244
hsa-miR-16	1418
hsa-miR-18a	17
hsa-miR-18b	7
hsa-miR-19a	27
hsa-miR-19b	252

Total number of rows: 717

Table truncated, full table size 11 Kbytes.

Supplementary data files not provided

Processed data included within Sample table