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Sample GSM1346190

Query DataSets for GSM1346190

Status

Public on Sep 01, 2014

Title

eoe_5

Sample type

RNA

Source name

Esophageal mucosa

Organism

Homo sapiens

Characteristics

age_years: 15.8
gender: male
eos/hpf: 60

Extracted molecule

total RNA

Extraction protocol

Total RNA was isolated using mirVana miRNA Isolation Kit, with phenol by Life Technologies. RNA was eluted in 100 uL of the kit elution buffer.

Label

N/A

Label protocol

N/A

Hybridization protocol

N/A

Scan protocol

N/A

Data processing

Raw data was normalized by means of calculated normalization factors based on sum of positive controls and sum of microRNA counts per NanoString Technologies.
MicroRNA with counts greater than background (average - 2 standard deviations) were considered detectable.

Submission date

Mar 11, 2014

Last update date

Sep 01, 2014

Contact name

Calies Menard-Katcher

Organization name

University of Colorado School of Medicine

Department

Pediatrics

Street address

13123 E. 16th St, B290

City

Aurora

State/province

ZIP/Postal code

80045

Country

USA

Platform ID

GPL16142

Series (2)

GSE55794	Nanostring nCounter human miRNA assay (v1) of eosinophilic esophagitis
GSE55795	MicroRNA assays of eosinophilic esophagitis

Data table header descriptions
ID_REF
VALUE	Normalized counts

Data table
ID_REF	VALUE
hsa-let-7a	1297
hsa-let-7b	660
hsa-let-7c	194
hsa-let-7d	275
hsa-let-7e	53
hsa-let-7f	347
hsa-let-7g	703
hsa-let-7i	389
hsa-miR-1	15
hsa-miR-7	9
hsa-miR-9	8
hsa-miR-10a	58
hsa-miR-10b	29
hsa-miR-15a	548
hsa-miR-15b	436
hsa-miR-16	1415
hsa-miR-18a	32
hsa-miR-18b	13
hsa-miR-19a	28
hsa-miR-19b	415

Total number of rows: 717

Table truncated, full table size 11 Kbytes.

Supplementary data files not provided

Processed data included within Sample table