|
| Status |
Public on Sep 08, 2006 |
| Title |
Anti-H3 ChIP-chip in Leu3-binding deficient strain ckl5127_LEU3ADantiH3_1 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
anti-H3 ChIP
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
Yeast strain: BY4720-LEU3null
expressing vector: pRS416-TEF1-MBPLeu3pAD, in which DNA-binding domain of Leu3 is deleted.
anti-H3 ChIPed DNA
|
| Biomaterial provider |
Cheol-Koo Lee in Lieb lab UNC
|
| Treatment protocol |
anti-H3 ChIPed DNA
|
| Growth protocol |
cells were grown to OD of 1
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Fixed cells were washed and lysed using bead beater and sonicated to get the extract
|
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
input extract
|
| Organism |
Saccharomyces cerevisiae |
| Characteristics |
Yeast strain: BY4720-LEU3null
expressing vector: pRS416-TEF1-MBPLeu3pAD, in which DNA-binding domain of Leu3 is deleted.
supernatant DNA as reference DNA
|
| Biomaterial provider |
Cheol-Koo Lee in Lieb lab UNC
|
| Treatment protocol |
supernatant DNA as reference DNA
|
| Growth protocol |
cells were grown to OD of 1
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Fixed cells were washed and lysed using bead beater and sonicated to get the extract
|
| Label |
Cy5
|
| |
|
| |
| Scan protocol |
Fluorescent array images were collected for both Cy3 and Cy5 with a GenePix 4000A fluorescent scanner and image intensity data were extracted and analyzed with GenePix Pro 5.0 analysis
|
| Description |
Yeast strain: BY4720-LEU3null
expressing vector: pRS416-TEF1-MBPLeu3pAD, in which DNA-binding domain of Leu3 is deleted
anti-Histone3 chiped DNA is Cy3-labeled
Flagged spots(low image quality) have been filtered.
|
| Data processing |
lowess normalization
|
| |
|
| Submission date |
Sep 07, 2006 |
| Last update date |
Oct 13, 2006 |
| Contact name |
Jason D Lieb |
| E-mail(s) |
jlieb@bio.unc.edu
|
| Phone |
(919) 843-3228
|
| Fax |
(919) 962-1625
|
| URL |
http://www.bio.unc.edu/faculty/lieb/labpages/home.shtml
|
| Organization name |
University of North Carolina at Chapel Hill
|
| Department |
Department of Biology
|
| Street address |
CB# 3280, 202 Fordham Hall
|
| City |
Chapel Hill |
| State/province |
NC |
| ZIP/Postal code |
27599-3280 |
| Country |
USA |
| |
|
| Platform ID |
GPL4279 |
| Series (2) |
| GSE5782 |
anti-H3 Chip-chip in Leu3overexpress or Leu3AD starins |
| GSE5785 |
Comparison of Leu3 binding in vitro and in vivo |
|
