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Sample GSM135209 Query DataSets for GSM135209
Status Public on Jan 01, 2008
Title Female BALB/c Meibomian Progesterone, biological rep 1
Sample type RNA
 
Source name Lacrimal glands from progesterone treated female BALB/c mice (glands pooled from 5-8 mice)
Organism Mus musculus
Characteristics Female BALB/c Meibomian Progesterone, biological rep 1
Extracted molecule total RNA
Extraction protocol RNA was purified with Trizol and RNAqueous spin columns following the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Codelink protocol from 2 microg total RNA using a CodeLink Expression Assay Reagent Kit
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 18 hr at 37C on GE Healthcare/Amersham Biosciences CodeLink UniSet Mouse I Bioarray. Bioarrays were washed and stained with streptavidin-Alexa 647 and washed again.
Scan protocol Bioarrays were scanned with a ScanArray Express HT scanner using ScanArray Express software.
Description Meibomian gland gene expression from ovarectomized mice treated with progesterone for 14 days.
Data processing Data were analyzed with the CodeLink Image Analysis software using the default settings and normalized using global scaling to a median target intensity on each array of 1.0.
 
Submission date Sep 07, 2006
Last update date Aug 27, 2007
Contact name David A Sullivan
E-mail(s) david.sullivan@schepens.harvard.edu
Phone (617) 912-0287
Fax (617) 912-0101
Organization name Schepens Eye Research Institute
Lab David Sullivan
Street address 20 Staniford Street
City Boston
State/province MA
ZIP/Postal code 02114
Country USA
 
Platform ID GPL4277
Series (1)
GSE5783 Estrogen's and progesterone's impact on gene expression in the mouse lacrimal and meibomoan gland.

Data table header descriptions
ID_REF
VALUE

Data table
ID_REF VALUE
AA015085 10.7038293
AA015403 97.22284918
AA024083 1.26571136
AA032529 8.36241825
AA041973 0.106715038
AA047943 4.712152908
AA060082 6.944360646
AA103180 0.024589753
AA105755 7.962147403
AA116457 1.562427058
AA118546 40.0876346
AA124289 0.505416951
AA124955 54.86464228
AA170147 13.06343448
AA175619 1.201330016
AA230756 3.48946337
AA240611 0.817926585
AA269839 0.030034351
AA271520 0.025138977
AA388194 1.529226213

Total number of rows: 10012

Table truncated, full table size 209 Kbytes.




Supplementary data files not provided

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