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Sample GSM135211 Query DataSets for GSM135211
Status Public on Jan 01, 2008
Title Female BALB/c Meibomian Progesterone, biological rep 3
Sample type RNA
 
Source name Meibomian glands from progesterone treated female BALB/c mice (glands pooled from 5-8 mice)
Organism Mus musculus
Characteristics Female BALB/c Meibomian Progesterone, biological rep 3
Extracted molecule total RNA
Extraction protocol RNA was purified with Trizol and RNAqueous spin columns following the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Codelink protocol from 2 microg total RNA using a CodeLink Expression Assay Reagent Kit
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 18 hr at 37C on GE Healthcare/Amersham Biosciences CodeLink UniSet Mouse I Bioarray. Bioarrays were washed and stained with streptavidin-Alexa 647 and washed again.
Scan protocol Bioarrays were scanned with a ScanArray Express HT scanner using ScanArray Express software.
Description Meibomian gland gene expression from ovarectomized mice treated with progesterone for 14 days.
Data processing Data were analyzed with the CodeLink Image Analysis software using the default settings and normalized using global scaling to a median target intensity on each array of 1.0.
 
Submission date Sep 07, 2006
Last update date Aug 27, 2007
Contact name David A Sullivan
E-mail(s) david.sullivan@schepens.harvard.edu
Phone (617) 912-0287
Fax (617) 912-0101
Organization name Schepens Eye Research Institute
Lab David Sullivan
Street address 20 Staniford Street
City Boston
State/province MA
ZIP/Postal code 02114
Country USA
 
Platform ID GPL4277
Series (1)
GSE5783 Estrogen's and progesterone's impact on gene expression in the mouse lacrimal and meibomoan gland.

Data table header descriptions
ID_REF
VALUE

Data table
ID_REF VALUE
AA015085 4.449565509
AA015403 102.706301
AA024083 1.537743251
AA032529 16.04908495
AA041973 0.103470393
AA047943 5.446130605
AA060082 6.067740875
AA103180 0.079256397
AA105755 16.35258074
AA116457 2.169700561
AA118546 29.84756838
AA124289 0.405507568
AA124955 23.02758668
AA170147 15.80468254
AA175619 0.634913606
AA230756 4.909738524
AA240611 0.410860159
AA269839 0.00441491
AA271520 0.06955856
AA388194 0.762893915

Total number of rows: 10012

Table truncated, full table size 208 Kbytes.




Supplementary data files not provided

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