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Sample GSM135213 Query DataSets for GSM135213
Status Public on Jan 01, 2008
Title Female BALB/c Meibomian Estrogen+Progesterone, biological rep 2
Sample type RNA
 
Source name Meibomian glands from estrogen treated female BALB/c mice (glands pooled from 5-8 mice)
Organism Mus musculus
Characteristics Female BALB/c Meibomian Estrogen+Progesterone, biological rep 2
Extracted molecule total RNA
Extraction protocol RNA was purified with Trizol and RNAqueous spin columns following the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Codelink protocol from 2 microg total RNA using a CodeLink Expression Assay Reagent Kit
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 18 hr at 37C on GE Healthcare/Amersham Biosciences CodeLink UniSet Mouse I Bioarray. Bioarrays were washed and stained with streptavidin-Alexa 647 and washed again.
Scan protocol Bioarrays were scanned with a ScanArray Express HT scanner using ScanArray Express software.
Description Meibomian gland gene expression from ovarectomized mice treated with estrogen+progesterone for 14 days.
Data processing Data were analyzed with the CodeLink Image Analysis software using the default settings and normalized using global scaling to a median target intensity on each array of 1.0.
 
Submission date Sep 07, 2006
Last update date Aug 27, 2007
Contact name David A Sullivan
E-mail(s) david.sullivan@schepens.harvard.edu
Phone (617) 912-0287
Fax (617) 912-0101
Organization name Schepens Eye Research Institute
Lab David Sullivan
Street address 20 Staniford Street
City Boston
State/province MA
ZIP/Postal code 02114
Country USA
 
Platform ID GPL4277
Series (1)
GSE5783 Estrogen's and progesterone's impact on gene expression in the mouse lacrimal and meibomoan gland.

Data table header descriptions
ID_REF
VALUE

Data table
ID_REF VALUE
AA015085 5.509652738
AA015403 101.8364398
AA024083 1.184601445
AA032529 4.544899723
AA041973 0.145285132
AA047943 4.018940959
AA060082 7.684335869
AA103180 0.045434189
AA105755 8.267082794
AA116457 1.887680392
AA118546 34.98120138
AA124289 0.565062679
AA124955 42.21257894
AA170147 10.76020038
AA175619 1.461675456
AA230756 2.83215936
AA240611 0.805226816
AA269839 0.038670959
AA271520 0.030647138
AA388194 1.677621827

Total number of rows: 10012

Table truncated, full table size 209 Kbytes.




Supplementary data files not provided

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