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Sample GSM135560 Query DataSets for GSM135560
Status Public on Jul 01, 2007
Title MEFB1 H4Ac Biological Replicate 2
Sample type other
 
Channel 1
Source name H4Ac chromatin immunoprecipitation (ChIP)
Organism Mus musculus
Characteristics 13.5dpc female mouse embryo fibroblast cell line (MEFB1). The cells have a paternal deletion of the imprinted Igf2r cluster.
Extracted molecule other
Label Alexa 647
 
Channel 2
Source name Input DNA (whole cell extract)
Organism Mus musculus
Characteristics 13.5dpc female mouse embryo fibroblast cell line (MEFB1). The cells have a paternal deletion of the imprinted Igf2r cluster.
Extracted molecule other
Label Alexa 555
 
 
Description The input and ChIP DNA were hybridized to the same microarray. Microarrays were scanned with a Genepix 4000B scanner (Axon Instruments).
Data processing The unnormalized values represent the log2 transformed 'Ratio of Medians' of each ID on the platform. To display the data, the average 'Ratio of Medians' was calculated for each PCR_FRAG_ID on the platform, then this single value was log2 transformed and plotted.
 
Submission date Sep 11, 2006
Last update date May 31, 2007
Contact name Denise P. Barlow
E-mail(s) denise.barlow@univie.ac.at
Organization name Center of Molecular Medicine (CeMM)
Department Austrian Academy of Sciences
Street address Dr. Bohrgasse 9/4
City Vienna
ZIP/Postal code 1030
Country Austria
 
Platform ID GPL4317
Series (1)
GSE5834 Active and repressive chromatin in the mammalian genome intersperse without spreading in imprinted gene clusters

Data table header descriptions
ID_REF
VALUE The log2 of the 'Ratio of Medians (Alexa 647/Alexa 555)'

Data table
ID_REF VALUE
1_1 -0.8
1_2 -1.041
1_3 -1.418
1_4 -0.906
1_5 -0.589
1_6 -0.752
1_7 -1.322
1_8 -1.52
928_1 -0.893
928_2 -0.946
928_3 -1.358
928_4 -0.724
928_5 -0.631
928_6 -1.013
928_7 -1.322
928_8 -1.345
1447_1 -0.543
1447_2 -0.791
1447_3 -0.99
1447_4 -0.312

Total number of rows: 3520

Table truncated, full table size 59 Kbytes.




Supplementary file Size Download File type/resource
GSM135560.txt.gz 331.3 Kb (ftp)(http) TXT

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