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Sample GSM1359615

Query DataSets for GSM1359615

Status

Public on Apr 01, 2014

Title

C1N

Sample type

RNA

Source name

lymph node metastasis

Organism

Homo sapiens

Characteristics

disease state: Colorectal carcinoma
patient: 1
tissue: lymph node metastasis

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

streptavidin-Alexa647

Label protocol

biotin end-labeled random-octamer oligonucleotide primers

Hybridization protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Scan protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Data processing

quantile normalization

Submission date

Mar 29, 2014

Last update date

Apr 01, 2014

Contact name

Cecilia Fernandez

Organization name

OSU

Street address

460 12th street

City

Columbus

ZIP/Postal code

43212

Country

USA

Platform ID

GPL16744

Series (1)

GSE56350

MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE	log2 quantile normalized

Data table
ID_REF	VALUE
HSHELA01:CONTROL:Plus/Plus	13.83391276
HSTRNL:CONTROL:Plus/Plus	11.69415376
HUMTRAB:CONTROL:Plus/Plus	13.24359606
HUMTRF:CONTROL:Plus/Plus	12.67700263
HUMTRMI-No1:CONTROL:Plus/Plus	10.92423235
HUMTRMI-No2:CONTROL:Plus/Plus	9.602241248
HUMTRN:CONTROL:Plus/Plus	11.84138305
HUMTRS:CONTROL:Plus/Plus	11.37988834
HUMTRV1A:CONTROL:Plus/Plus	11.9413192
Human GAPDH:CONTROL:Plus/Plus	3.518630526
hsa-let-7a:MATURE:Plus/Plus	3.487504059
hsa-let-7a*:MATURE:Plus/Plus	3.518630526
hsa-let-7b:MATURE:Plus/Plus	7.577992558
hsa-let-7b*:MATURE:Plus/Plus	3.518630526
hsa-let-7c:MATURE:Plus/Plus	3.518630526
hsa-let-7d:MATURE:Plus/Plus	3.518630526
hsa-let-7d*:MATURE:Plus/Plus	5.002920561
hsa-let-7e:MATURE:Plus/Plus	4.111850598
hsa-let-7e*:MATURE:Plus/Plus	6.608886141
hsa-let-7f:MATURE:Plus/Plus	3.518630526

Total number of rows: 784

Table truncated, full table size 32 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1359615_P317_C1N_drusco_croce_pmt800_90707.gpr.gz	490.4 Kb	(ftp)(http)	GPR
Processed data included within Sample table