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Sample GSM1359616

Query DataSets for GSM1359616

Status

Public on Apr 01, 2014

Title

C2T

Sample type

RNA

Source name

tumor

Organism

Homo sapiens

Characteristics

disease state: Colorectal carcinoma
patient: 2
tissue: colorectal carcinoma tumor

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

streptavidin-Alexa647

Label protocol

biotin end-labeled random-octamer oligonucleotide primers

Hybridization protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Scan protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Data processing

quantile normalization

Submission date

Mar 29, 2014

Last update date

Apr 01, 2014

Contact name

Cecilia Fernandez

Organization name

OSU

Street address

460 12th street

City

Columbus

ZIP/Postal code

43212

Country

USA

Platform ID

GPL16744

Series (1)

GSE56350

MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE	log2 quantile normalized

Data table
ID_REF	VALUE
HSHELA01:CONTROL:Plus/Plus	14.38780928
HSTRNL:CONTROL:Plus/Plus	11.4976113
HUMTRAB:CONTROL:Plus/Plus	12.83388598
HUMTRF:CONTROL:Plus/Plus	12.15244939
HUMTRMI-No1:CONTROL:Plus/Plus	10.70093378
HUMTRMI-No2:CONTROL:Plus/Plus	9.334848215
HUMTRN:CONTROL:Plus/Plus	12.03496147
HUMTRS:CONTROL:Plus/Plus	12.25364061
HUMTRV1A:CONTROL:Plus/Plus	11.7653466
Human GAPDH:CONTROL:Plus/Plus	3.518630526
hsa-let-7a:MATURE:Plus/Plus	3.518630526
hsa-let-7a*:MATURE:Plus/Plus	3.518630526
hsa-let-7b:MATURE:Plus/Plus	7.866095285
hsa-let-7b*:MATURE:Plus/Plus	3.518630526
hsa-let-7c:MATURE:Plus/Plus	5.469757196
hsa-let-7d:MATURE:Plus/Plus	3.518630526
hsa-let-7d*:MATURE:Plus/Plus	6.748488665
hsa-let-7e:MATURE:Plus/Plus	3.518630526
hsa-let-7e*:MATURE:Plus/Plus	7.917640547
hsa-let-7f:MATURE:Plus/Plus	3.518630526

Total number of rows: 784

Table truncated, full table size 32 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1359616_P318_C2T_drusco_croce_pmt800_90707.gpr.gz	478.3 Kb	(ftp)(http)	GPR
Processed data included within Sample table