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Sample GSM1359627

Query DataSets for GSM1359627

Status

Public on Apr 01, 2014

Title

C7N

Sample type

RNA

Source name

lymph node metastasis

Organism

Homo sapiens

Characteristics

disease state: Colorectal carcinoma
patient: 7
tissue: lymph node metastasis

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

streptavidin-Alexa647

Label protocol

biotin end-labeled random-octamer oligonucleotide primers

Hybridization protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Scan protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Data processing

quantile normalization

Submission date

Mar 29, 2014

Last update date

Apr 01, 2014

Contact name

Cecilia Fernandez

Organization name

OSU

Street address

460 12th street

City

Columbus

ZIP/Postal code

43212

Country

USA

Platform ID

GPL16744

Series (1)

GSE56350

MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE	log2 quantile normalized

Data table
ID_REF	VALUE
HSHELA01:CONTROL:Plus/Plus	15.01734785
HSTRNL:CONTROL:Plus/Plus	12.15244939
HUMTRAB:CONTROL:Plus/Plus	13.0175116
HUMTRF:CONTROL:Plus/Plus	12.25364061
HUMTRMI-No1:CONTROL:Plus/Plus	10.29822663
HUMTRMI-No2:CONTROL:Plus/Plus	10.87706239
HUMTRN:CONTROL:Plus/Plus	10.5443525
HUMTRS:CONTROL:Plus/Plus	13.52739515
HUMTRV1A:CONTROL:Plus/Plus	11.4976113
Human GAPDH:CONTROL:Plus/Plus	3.518630526
hsa-let-7a:MATURE:Plus/Plus	7.037848217
hsa-let-7a*:MATURE:Plus/Plus	3.518630526
hsa-let-7b:MATURE:Plus/Plus	9.278552596
hsa-let-7b*:MATURE:Plus/Plus	3.518630526
hsa-let-7c:MATURE:Plus/Plus	6.389577899
hsa-let-7d:MATURE:Plus/Plus	3.518630526
hsa-let-7d*:MATURE:Plus/Plus	4.836741822
hsa-let-7e:MATURE:Plus/Plus	5.280283016
hsa-let-7e*:MATURE:Plus/Plus	6.727662898
hsa-let-7f:MATURE:Plus/Plus	3.518630526

Total number of rows: 784

Table truncated, full table size 32 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1359627_P329_C7N_drusco_croce_pmt800_90707.gpr.gz	488.7 Kb	(ftp)(http)	GPR
Processed data included within Sample table