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Sample GSM1359639

Query DataSets for GSM1359639

Status

Public on Apr 01, 2014

Title

C13N

Sample type

RNA

Source name

lymph node metastasis

Organism

Homo sapiens

Characteristics

disease state: Colorectal carcinoma
patient: 13
tissue: lymph node metastasis

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

streptavidin-Alexa647

Label protocol

biotin end-labeled random-octamer oligonucleotide primers

Hybridization protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Scan protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Data processing

quantile normalization

Submission date

Mar 29, 2014

Last update date

Apr 01, 2014

Contact name

Cecilia Fernandez

Organization name

OSU

Street address

460 12th street

City

Columbus

ZIP/Postal code

43212

Country

USA

Platform ID

GPL16744

Series (1)

GSE56350

MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE	log2 quantile normalized

Data table
ID_REF	VALUE
HSHELA01:CONTROL:Plus/Plus	15.01734785
HSTRNL:CONTROL:Plus/Plus	12.40405542
HUMTRAB:CONTROL:Plus/Plus	12.15244939
HUMTRF:CONTROL:Plus/Plus	11.62512909
HUMTRMI-No1:CONTROL:Plus/Plus	9.896043439
HUMTRMI-No2:CONTROL:Plus/Plus	11.37988834
HUMTRN:CONTROL:Plus/Plus	10.5052639
HUMTRS:CONTROL:Plus/Plus	13.83391276
HUMTRV1A:CONTROL:Plus/Plus	10.83517639
Human GAPDH:CONTROL:Plus/Plus	3.518630526
hsa-let-7a:MATURE:Plus/Plus	7.300667659
hsa-let-7a*:MATURE:Plus/Plus	3.518630526
hsa-let-7b:MATURE:Plus/Plus	8.983294803
hsa-let-7b*:MATURE:Plus/Plus	3.518630526
hsa-let-7c:MATURE:Plus/Plus	7.924431935
hsa-let-7d:MATURE:Plus/Plus	6.522329652
hsa-let-7d*:MATURE:Plus/Plus	3.518630526
hsa-let-7e:MATURE:Plus/Plus	4.823648811
hsa-let-7e*:MATURE:Plus/Plus	7.472508841
hsa-let-7f:MATURE:Plus/Plus	3.518630526

Total number of rows: 784

Table truncated, full table size 32 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1359639_P341_C13N_drusco_croce_pmt800_91107.gpr.gz	497.6 Kb	(ftp)(http)	GPR
Processed data included within Sample table