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Sample GSM1359648

Query DataSets for GSM1359648

Status

Public on Apr 01, 2014

Title

C18T

Sample type

RNA

Source name

tumor

Organism

Homo sapiens

Characteristics

disease state: Colorectal carcinoma
patient: 18
tissue: colorectal carcinoma tumor

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

streptavidin-Alexa647

Label protocol

biotin end-labeled random-octamer oligonucleotide primers

Hybridization protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Scan protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Data processing

quantile normalization

Submission date

Mar 29, 2014

Last update date

Apr 01, 2014

Contact name

Cecilia Fernandez

Organization name

OSU

Street address

460 12th street

City

Columbus

ZIP/Postal code

43212

Country

USA

Platform ID

GPL16744

Series (1)

GSE56350

MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE	log2 quantile normalized

Data table
ID_REF	VALUE
HSHELA01:CONTROL:Plus/Plus	13.0175116
HSTRNL:CONTROL:Plus/Plus	11.37988834
HUMTRAB:CONTROL:Plus/Plus	10.78494031
HUMTRF:CONTROL:Plus/Plus	11.02656228
HUMTRMI-No1:CONTROL:Plus/Plus	8.46796766
HUMTRMI-No2:CONTROL:Plus/Plus	10.33314325
HUMTRN:CONTROL:Plus/Plus	9.111150848
HUMTRS:CONTROL:Plus/Plus	14.38780928
HUMTRV1A:CONTROL:Plus/Plus	10.16879886
Human GAPDH:CONTROL:Plus/Plus	5.330694883
hsa-let-7a:MATURE:Plus/Plus	3.518630526
hsa-let-7a*:MATURE:Plus/Plus	3.518630526
hsa-let-7b:MATURE:Plus/Plus	8.494550712
hsa-let-7b*:MATURE:Plus/Plus	3.518630526
hsa-let-7c:MATURE:Plus/Plus	6.843555936
hsa-let-7d:MATURE:Plus/Plus	3.518630526
hsa-let-7d*:MATURE:Plus/Plus	3.518630526
hsa-let-7e:MATURE:Plus/Plus	4.111850598
hsa-let-7e*:MATURE:Plus/Plus	7.700599181
hsa-let-7f:MATURE:Plus/Plus	3.518630526

Total number of rows: 784

Table truncated, full table size 32 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1359648_P350_C18T_drusco_croce_pmt800_91107.gpr.gz	485.9 Kb	(ftp)(http)	GPR
Processed data included within Sample table