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Sample GSM1359651 Query DataSets for GSM1359651
Status Public on Apr 01, 2014
Title C19N
Sample type RNA
 
Source name lymph node metastasis
Organism Homo sapiens
Characteristics disease state: Colorectal carcinoma
patient: 19
tissue: lymph node metastasis
Extracted molecule total RNA
Extraction protocol Trizol
Label streptavidin-Alexa647
Label protocol biotin end-labeled random-octamer oligonucleotide primers
 
Hybridization protocol Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008
Scan protocol Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008
Data processing quantile normalization
 
Submission date Mar 29, 2014
Last update date Apr 01, 2014
Contact name Cecilia Fernandez
Organization name OSU
Street address 460 12th street
City Columbus
ZIP/Postal code 43212
Country USA
 
Platform ID GPL16744
Series (1)
GSE56350 MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE log2 quantile normalized

Data table
ID_REF VALUE
HSHELA01:CONTROL:Plus/Plus 15.01734785
HSTRNL:CONTROL:Plus/Plus 13.0175116
HUMTRAB:CONTROL:Plus/Plus 12.83388598
HUMTRF:CONTROL:Plus/Plus 11.84138305
HUMTRMI-No1:CONTROL:Plus/Plus 10.29822663
HUMTRMI-No2:CONTROL:Plus/Plus 11.43639093
HUMTRN:CONTROL:Plus/Plus 11.9413192
HUMTRS:CONTROL:Plus/Plus 13.52739515
HUMTRV1A:CONTROL:Plus/Plus 12.67700263
Human GAPDH:CONTROL:Plus/Plus 4.768381334
hsa-let-7a:MATURE:Plus/Plus 9.181998394
hsa-let-7a*:MATURE:Plus/Plus 3.518630526
hsa-let-7b:MATURE:Plus/Plus 10.58361754
hsa-let-7b*:MATURE:Plus/Plus 4.058626967
hsa-let-7c:MATURE:Plus/Plus 9.616932626
hsa-let-7d:MATURE:Plus/Plus 8.380967522
hsa-let-7d*:MATURE:Plus/Plus 5.510394297
hsa-let-7e:MATURE:Plus/Plus 7.680402784
hsa-let-7e*:MATURE:Plus/Plus 6.491120674
hsa-let-7f:MATURE:Plus/Plus 3.518630526

Total number of rows: 784

Table truncated, full table size 32 Kbytes.




Supplementary file Size Download File type/resource
GSM1359651_P353_C19N_drusco_croce_pmt800_91107.gpr.gz 497.7 Kb (ftp)(http) GPR
Processed data included within Sample table
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