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Sample GSM1359654

Query DataSets for GSM1359654

Status

Public on Apr 01, 2014

Title

26T

Sample type

RNA

Source name

tumor

Organism

Homo sapiens

Characteristics

disease state: Colorectal carcinoma
patient: 26
tissue: colorectal carcinoma tumor

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

streptavidin-Alexa647

Label protocol

biotin end-labeled random-octamer oligonucleotide primers

Hybridization protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Scan protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Data processing

quantile normalization

Submission date

Mar 29, 2014

Last update date

Apr 01, 2014

Contact name

Cecilia Fernandez

Organization name

OSU

Street address

460 12th street

City

Columbus

ZIP/Postal code

43212

Country

USA

Platform ID

GPL16744

Series (1)

GSE56350

MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE	log2 quantile normalized

Data table
ID_REF	VALUE
HSHELA01:CONTROL:Plus/Plus	11.84138305
HSTRNL:CONTROL:Plus/Plus	8.585183615
HUMTRAB:CONTROL:Plus/Plus	12.83388598
HUMTRF:CONTROL:Plus/Plus	11.56663613
HUMTRMI-No1:CONTROL:Plus/Plus	10.97198987
HUMTRMI-No2:CONTROL:Plus/Plus	7.379609094
HUMTRN:CONTROL:Plus/Plus	12.25364061
HUMTRS:CONTROL:Plus/Plus	11.07598916
HUMTRV1A:CONTROL:Plus/Plus	13.0175116
Human GAPDH:CONTROL:Plus/Plus	3.518630526
hsa-let-7a:MATURE:Plus/Plus	3.518630526
hsa-let-7a*:MATURE:Plus/Plus	3.518630526
hsa-let-7b:MATURE:Plus/Plus	7.776194483
hsa-let-7b*:MATURE:Plus/Plus	3.609798437
hsa-let-7c:MATURE:Plus/Plus	3.518630526
hsa-let-7d:MATURE:Plus/Plus	3.541814318
hsa-let-7d*:MATURE:Plus/Plus	8.398537359
hsa-let-7e:MATURE:Plus/Plus	4.97237997
hsa-let-7e*:MATURE:Plus/Plus	7.27577089
hsa-let-7f:MATURE:Plus/Plus	3.518630526

Total number of rows: 784

Table truncated, full table size 32 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1359654_P398_26T_drusco_croce_pmt800_91907.gpr.gz	498.0 Kb	(ftp)(http)	GPR
Processed data included within Sample table