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Sample GSM1359657

Query DataSets for GSM1359657

Status

Public on Apr 01, 2014

Title

21T

Sample type

RNA

Source name

tumor

Organism

Homo sapiens

Characteristics

disease state: Colorectal carcinoma
patient: 21
tissue: colorectal carcinoma tumor

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

streptavidin-Alexa647

Label protocol

biotin end-labeled random-octamer oligonucleotide primers

Hybridization protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Scan protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Data processing

quantile normalization

Submission date

Mar 29, 2014

Last update date

Apr 01, 2014

Contact name

Cecilia Fernandez

Organization name

OSU

Street address

460 12th street

City

Columbus

ZIP/Postal code

43212

Country

USA

Platform ID

GPL16744

Series (1)

GSE56350

MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE	log2 quantile normalized

Data table
ID_REF	VALUE
HSHELA01:CONTROL:Plus/Plus	15.01734785
HSTRNL:CONTROL:Plus/Plus	13.0175116
HUMTRAB:CONTROL:Plus/Plus	12.40405542
HUMTRF:CONTROL:Plus/Plus	11.9413192
HUMTRMI-No1:CONTROL:Plus/Plus	10.5443525
HUMTRMI-No2:CONTROL:Plus/Plus	11.69415376
HUMTRN:CONTROL:Plus/Plus	10.07348692
HUMTRS:CONTROL:Plus/Plus	13.52739515
HUMTRV1A:CONTROL:Plus/Plus	11.84138305
Human GAPDH:CONTROL:Plus/Plus	4.120401186
hsa-let-7a:MATURE:Plus/Plus	9.389413399
hsa-let-7a*:MATURE:Plus/Plus	3.518630526
hsa-let-7b:MATURE:Plus/Plus	10.78494031
hsa-let-7b*:MATURE:Plus/Plus	4.577171182
hsa-let-7c:MATURE:Plus/Plus	10.05141735
hsa-let-7d:MATURE:Plus/Plus	8.494550712
hsa-let-7d*:MATURE:Plus/Plus	7.01184819
hsa-let-7e:MATURE:Plus/Plus	8.05711472
hsa-let-7e*:MATURE:Plus/Plus	6.980171206
hsa-let-7f:MATURE:Plus/Plus	3.518630526

Total number of rows: 784

Table truncated, full table size 32 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1359657_P580_21T_drusco_croce_pmt800_100207.gpr.gz	495.2 Kb	(ftp)(http)	GPR
Processed data included within Sample table