GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM1359660

Query DataSets for GSM1359660

Status

Public on Apr 01, 2014

Title

24N

Sample type

RNA

Source name

lymph node metastasis

Organism

Homo sapiens

Characteristics

disease state: Colorectal carcinoma
patient: 24
tissue: lymph node metastasis

Extracted molecule

total RNA

Extraction protocol

Trizol

Label

streptavidin-Alexa647

Label protocol

biotin end-labeled random-octamer oligonucleotide primers

Hybridization protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Scan protocol

Liu C-G, Calin GA, Volinia S and Croce CM. MicroRNA expression profiling using microarrays. Nature Protocols, 3(4):563-578, 2008

Data processing

quantile normalization

Submission date

Mar 29, 2014

Last update date

Apr 01, 2014

Contact name

Cecilia Fernandez

Organization name

OSU

Street address

460 12th street

City

Columbus

ZIP/Postal code

43212

Country

USA

Platform ID

GPL16744

Series (1)

GSE56350

MicroRNA profiles discriminate among colon cancer metastasis

Data table header descriptions
ID_REF
VALUE	log2 quantile normalized

Data table
ID_REF	VALUE
HSHELA01:CONTROL:Plus/Plus	14.38780928
HSTRNL:CONTROL:Plus/Plus	10.97198987
HUMTRAB:CONTROL:Plus/Plus	10.5443525
HUMTRF:CONTROL:Plus/Plus	10.62371043
HUMTRMI-No1:CONTROL:Plus/Plus	9.039437912
HUMTRMI-No2:CONTROL:Plus/Plus	9.181998394
HUMTRN:CONTROL:Plus/Plus	8.670472503
HUMTRS:CONTROL:Plus/Plus	13.24359606
HUMTRV1A:CONTROL:Plus/Plus	10.05141735
Human GAPDH:CONTROL:Plus/Plus	3.53503257
hsa-let-7a:MATURE:Plus/Plus	7.945173168
hsa-let-7a*:MATURE:Plus/Plus	3.53503257
hsa-let-7b:MATURE:Plus/Plus	8.995393055
hsa-let-7b*:MATURE:Plus/Plus	7.513663609
hsa-let-7c:MATURE:Plus/Plus	8.425007157
hsa-let-7d:MATURE:Plus/Plus	3.481811218
hsa-let-7d*:MATURE:Plus/Plus	3.53503257
hsa-let-7e:MATURE:Plus/Plus	3.53503257
hsa-let-7e*:MATURE:Plus/Plus	7.636903465
hsa-let-7f:MATURE:Plus/Plus	3.53503257

Total number of rows: 784

Table truncated, full table size 31 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1359660_P583_24N_drusco_croce_pmt800_100207.gpr.gz	462.9 Kb	(ftp)(http)	GPR
Processed data included within Sample table